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Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients

The complexity of breast cancer includes many interacting biological processes that make it difficult to find appropriate therapeutic treatments. Therefore, identifying potential diagnostic and prognostic biomarkers is urgently needed. Previous studies demonstrated that 26S proteasome delta subunit,...

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Autores principales: Xuan, Do Thi Minh, Wu, Chung-Che, Kao, Tzu-Jen, Ta, Hoang Dang Khoa, Anuraga, Gangga, Andriani, Vivin, Athoillah, Muhammad, Chiao, Chung-Chieh, Wu, Yung-Fu, Lee, Kuen-Haur, Wang, Chih-Yang, Chuang, Jian-Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8660617/
https://www.ncbi.nlm.nih.gov/pubmed/34839279
http://dx.doi.org/10.18632/aging.203722
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author Xuan, Do Thi Minh
Wu, Chung-Che
Kao, Tzu-Jen
Ta, Hoang Dang Khoa
Anuraga, Gangga
Andriani, Vivin
Athoillah, Muhammad
Chiao, Chung-Chieh
Wu, Yung-Fu
Lee, Kuen-Haur
Wang, Chih-Yang
Chuang, Jian-Ying
author_facet Xuan, Do Thi Minh
Wu, Chung-Che
Kao, Tzu-Jen
Ta, Hoang Dang Khoa
Anuraga, Gangga
Andriani, Vivin
Athoillah, Muhammad
Chiao, Chung-Chieh
Wu, Yung-Fu
Lee, Kuen-Haur
Wang, Chih-Yang
Chuang, Jian-Ying
author_sort Xuan, Do Thi Minh
collection PubMed
description The complexity of breast cancer includes many interacting biological processes that make it difficult to find appropriate therapeutic treatments. Therefore, identifying potential diagnostic and prognostic biomarkers is urgently needed. Previous studies demonstrated that 26S proteasome delta subunit, non-ATPase (PSMD) family members significantly contribute to the degradation of damaged, misfolded, abnormal, and foreign proteins. However, transcriptional expressions of PSMD family genes in breast cancer still remain largely unexplored. Consequently, we used a holistic bioinformatics approach to explore PSMD genes involved in breast cancer patients by integrating several high-throughput databases, including The Cancer Genome Atlas (TCGA), cBioPortal, Oncomine, and Kaplan-Meier plotter. These data demonstrated that PSMD1, PSMD2, PSMD3, PSMD7, PSMD10, PSMD12, and PSMD14 were expressed at significantly higher levels in breast cancer tissue compared to normal tissues. Notably, the increased expressions of PSMD family genes were correlated with poor prognoses of breast cancer patients, which suggests their roles in tumorigenesis. Meanwhile, network and pathway analyses also indicated that PSMD family genes were positively correlated with ubiquinone metabolism, immune system, and cell-cycle regulatory pathways. Collectively, this study revealed that PSMD family members are potential prognostic biomarkers for breast cancer progression and possible promising clinical therapeutic targets.
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spelling pubmed-86606172021-12-13 Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients Xuan, Do Thi Minh Wu, Chung-Che Kao, Tzu-Jen Ta, Hoang Dang Khoa Anuraga, Gangga Andriani, Vivin Athoillah, Muhammad Chiao, Chung-Chieh Wu, Yung-Fu Lee, Kuen-Haur Wang, Chih-Yang Chuang, Jian-Ying Aging (Albany NY) Research Paper The complexity of breast cancer includes many interacting biological processes that make it difficult to find appropriate therapeutic treatments. Therefore, identifying potential diagnostic and prognostic biomarkers is urgently needed. Previous studies demonstrated that 26S proteasome delta subunit, non-ATPase (PSMD) family members significantly contribute to the degradation of damaged, misfolded, abnormal, and foreign proteins. However, transcriptional expressions of PSMD family genes in breast cancer still remain largely unexplored. Consequently, we used a holistic bioinformatics approach to explore PSMD genes involved in breast cancer patients by integrating several high-throughput databases, including The Cancer Genome Atlas (TCGA), cBioPortal, Oncomine, and Kaplan-Meier plotter. These data demonstrated that PSMD1, PSMD2, PSMD3, PSMD7, PSMD10, PSMD12, and PSMD14 were expressed at significantly higher levels in breast cancer tissue compared to normal tissues. Notably, the increased expressions of PSMD family genes were correlated with poor prognoses of breast cancer patients, which suggests their roles in tumorigenesis. Meanwhile, network and pathway analyses also indicated that PSMD family genes were positively correlated with ubiquinone metabolism, immune system, and cell-cycle regulatory pathways. Collectively, this study revealed that PSMD family members are potential prognostic biomarkers for breast cancer progression and possible promising clinical therapeutic targets. Impact Journals 2021-11-28 /pmc/articles/PMC8660617/ /pubmed/34839279 http://dx.doi.org/10.18632/aging.203722 Text en Copyright: © 2021 Xuan et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Xuan, Do Thi Minh
Wu, Chung-Che
Kao, Tzu-Jen
Ta, Hoang Dang Khoa
Anuraga, Gangga
Andriani, Vivin
Athoillah, Muhammad
Chiao, Chung-Chieh
Wu, Yung-Fu
Lee, Kuen-Haur
Wang, Chih-Yang
Chuang, Jian-Ying
Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients
title Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients
title_full Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients
title_fullStr Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients
title_full_unstemmed Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients
title_short Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients
title_sort prognostic and immune infiltration signatures of proteasome 26s subunit, non-atpase (psmd) family genes in breast cancer patients
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8660617/
https://www.ncbi.nlm.nih.gov/pubmed/34839279
http://dx.doi.org/10.18632/aging.203722
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