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Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients
The complexity of breast cancer includes many interacting biological processes that make it difficult to find appropriate therapeutic treatments. Therefore, identifying potential diagnostic and prognostic biomarkers is urgently needed. Previous studies demonstrated that 26S proteasome delta subunit,...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8660617/ https://www.ncbi.nlm.nih.gov/pubmed/34839279 http://dx.doi.org/10.18632/aging.203722 |
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author | Xuan, Do Thi Minh Wu, Chung-Che Kao, Tzu-Jen Ta, Hoang Dang Khoa Anuraga, Gangga Andriani, Vivin Athoillah, Muhammad Chiao, Chung-Chieh Wu, Yung-Fu Lee, Kuen-Haur Wang, Chih-Yang Chuang, Jian-Ying |
author_facet | Xuan, Do Thi Minh Wu, Chung-Che Kao, Tzu-Jen Ta, Hoang Dang Khoa Anuraga, Gangga Andriani, Vivin Athoillah, Muhammad Chiao, Chung-Chieh Wu, Yung-Fu Lee, Kuen-Haur Wang, Chih-Yang Chuang, Jian-Ying |
author_sort | Xuan, Do Thi Minh |
collection | PubMed |
description | The complexity of breast cancer includes many interacting biological processes that make it difficult to find appropriate therapeutic treatments. Therefore, identifying potential diagnostic and prognostic biomarkers is urgently needed. Previous studies demonstrated that 26S proteasome delta subunit, non-ATPase (PSMD) family members significantly contribute to the degradation of damaged, misfolded, abnormal, and foreign proteins. However, transcriptional expressions of PSMD family genes in breast cancer still remain largely unexplored. Consequently, we used a holistic bioinformatics approach to explore PSMD genes involved in breast cancer patients by integrating several high-throughput databases, including The Cancer Genome Atlas (TCGA), cBioPortal, Oncomine, and Kaplan-Meier plotter. These data demonstrated that PSMD1, PSMD2, PSMD3, PSMD7, PSMD10, PSMD12, and PSMD14 were expressed at significantly higher levels in breast cancer tissue compared to normal tissues. Notably, the increased expressions of PSMD family genes were correlated with poor prognoses of breast cancer patients, which suggests their roles in tumorigenesis. Meanwhile, network and pathway analyses also indicated that PSMD family genes were positively correlated with ubiquinone metabolism, immune system, and cell-cycle regulatory pathways. Collectively, this study revealed that PSMD family members are potential prognostic biomarkers for breast cancer progression and possible promising clinical therapeutic targets. |
format | Online Article Text |
id | pubmed-8660617 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-86606172021-12-13 Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients Xuan, Do Thi Minh Wu, Chung-Che Kao, Tzu-Jen Ta, Hoang Dang Khoa Anuraga, Gangga Andriani, Vivin Athoillah, Muhammad Chiao, Chung-Chieh Wu, Yung-Fu Lee, Kuen-Haur Wang, Chih-Yang Chuang, Jian-Ying Aging (Albany NY) Research Paper The complexity of breast cancer includes many interacting biological processes that make it difficult to find appropriate therapeutic treatments. Therefore, identifying potential diagnostic and prognostic biomarkers is urgently needed. Previous studies demonstrated that 26S proteasome delta subunit, non-ATPase (PSMD) family members significantly contribute to the degradation of damaged, misfolded, abnormal, and foreign proteins. However, transcriptional expressions of PSMD family genes in breast cancer still remain largely unexplored. Consequently, we used a holistic bioinformatics approach to explore PSMD genes involved in breast cancer patients by integrating several high-throughput databases, including The Cancer Genome Atlas (TCGA), cBioPortal, Oncomine, and Kaplan-Meier plotter. These data demonstrated that PSMD1, PSMD2, PSMD3, PSMD7, PSMD10, PSMD12, and PSMD14 were expressed at significantly higher levels in breast cancer tissue compared to normal tissues. Notably, the increased expressions of PSMD family genes were correlated with poor prognoses of breast cancer patients, which suggests their roles in tumorigenesis. Meanwhile, network and pathway analyses also indicated that PSMD family genes were positively correlated with ubiquinone metabolism, immune system, and cell-cycle regulatory pathways. Collectively, this study revealed that PSMD family members are potential prognostic biomarkers for breast cancer progression and possible promising clinical therapeutic targets. Impact Journals 2021-11-28 /pmc/articles/PMC8660617/ /pubmed/34839279 http://dx.doi.org/10.18632/aging.203722 Text en Copyright: © 2021 Xuan et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Xuan, Do Thi Minh Wu, Chung-Che Kao, Tzu-Jen Ta, Hoang Dang Khoa Anuraga, Gangga Andriani, Vivin Athoillah, Muhammad Chiao, Chung-Chieh Wu, Yung-Fu Lee, Kuen-Haur Wang, Chih-Yang Chuang, Jian-Ying Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients |
title | Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients |
title_full | Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients |
title_fullStr | Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients |
title_full_unstemmed | Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients |
title_short | Prognostic and immune infiltration signatures of proteasome 26S subunit, non-ATPase (PSMD) family genes in breast cancer patients |
title_sort | prognostic and immune infiltration signatures of proteasome 26s subunit, non-atpase (psmd) family genes in breast cancer patients |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8660617/ https://www.ncbi.nlm.nih.gov/pubmed/34839279 http://dx.doi.org/10.18632/aging.203722 |
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