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PDBsum extras: SARS‐CoV‐2 and AlphaFold models
The PDBsum web server provides structural analyses of the entries in the Protein Data Bank (PDB). Two recent additions are described here. The first is the detailed analysis of the SARS‐CoV‐2 virus protein structures in the PDB. These include the variants of concern, which are shown both on the sequ...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8662102/ https://www.ncbi.nlm.nih.gov/pubmed/34779073 http://dx.doi.org/10.1002/pro.4238 |
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author | Laskowski, Roman A. Thornton, Janet M. |
author_facet | Laskowski, Roman A. Thornton, Janet M. |
author_sort | Laskowski, Roman A. |
collection | PubMed |
description | The PDBsum web server provides structural analyses of the entries in the Protein Data Bank (PDB). Two recent additions are described here. The first is the detailed analysis of the SARS‐CoV‐2 virus protein structures in the PDB. These include the variants of concern, which are shown both on the sequences and 3D structures of the proteins. The second addition is the inclusion of the available AlphaFold models for human proteins. The pages allow a search of the protein against existing structures in the PDB via the Sequence Annotated by Structure (SAS) server, so one can easily compare the predicted model against experimentally determined structures. The server is freely accessible to all at http://www.ebi.ac.uk/pdbsum. |
format | Online Article Text |
id | pubmed-8662102 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86621022021-12-10 PDBsum extras: SARS‐CoV‐2 and AlphaFold models Laskowski, Roman A. Thornton, Janet M. Protein Sci Tools for Protein Science The PDBsum web server provides structural analyses of the entries in the Protein Data Bank (PDB). Two recent additions are described here. The first is the detailed analysis of the SARS‐CoV‐2 virus protein structures in the PDB. These include the variants of concern, which are shown both on the sequences and 3D structures of the proteins. The second addition is the inclusion of the available AlphaFold models for human proteins. The pages allow a search of the protein against existing structures in the PDB via the Sequence Annotated by Structure (SAS) server, so one can easily compare the predicted model against experimentally determined structures. The server is freely accessible to all at http://www.ebi.ac.uk/pdbsum. John Wiley & Sons, Inc. 2021-11-24 2022-01 /pmc/articles/PMC8662102/ /pubmed/34779073 http://dx.doi.org/10.1002/pro.4238 Text en © 2021 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Tools for Protein Science Laskowski, Roman A. Thornton, Janet M. PDBsum extras: SARS‐CoV‐2 and AlphaFold models |
title |
PDBsum extras: SARS‐CoV‐2 and AlphaFold models |
title_full |
PDBsum extras: SARS‐CoV‐2 and AlphaFold models |
title_fullStr |
PDBsum extras: SARS‐CoV‐2 and AlphaFold models |
title_full_unstemmed |
PDBsum extras: SARS‐CoV‐2 and AlphaFold models |
title_short |
PDBsum extras: SARS‐CoV‐2 and AlphaFold models |
title_sort | pdbsum extras: sars‐cov‐2 and alphafold models |
topic | Tools for Protein Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8662102/ https://www.ncbi.nlm.nih.gov/pubmed/34779073 http://dx.doi.org/10.1002/pro.4238 |
work_keys_str_mv | AT laskowskiromana pdbsumextrassarscov2andalphafoldmodels AT thorntonjanetm pdbsumextrassarscov2andalphafoldmodels |