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The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020

BACKGROUND: Population-level mathematical models of outbreaks typically assume that disease transmission is not impacted by population density (‘frequency-dependent’) or that it increases linearly with density (‘density-dependent’). AIM: We sought evidence for the role of population density in SARS-...

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Autores principales: Nightingale, Emily S, Brady, Oliver J, Yakob, Laith, Gimma, Amy, Jit, Mark, Jarvis, Christopher I, Waterlow, Naomi R, Procter, Simon R, Auzenbergs, Megan, Tully, Damien C, Simons, David, Endo, Akira, Hellewell, Joel, Lowe, Rachel, Foss, Anna M, van Zandvoort, Kevin, Pearson, Carl AB, Showering, Alicia, Klepac, Petra, Medley, Graham, Quilty, Billy J, Diamond, Charlie, Edmunds, W John, Rosello, Alicia, Barnard, Rosanna C, Abbas, Kaja, Sherratt, Katharine, Williams, Jack, Meakin, Sophie R, Quaife, Matthew, Russell, Timothy W, Villabona-Arenas, C Julian, Prem, Kiesha, Sun, Fiona Yueqian, Davies, Nicholas G, Eggo, Rosalind M, Knight, Gwenan M, Kucharski, Adam J, Sandmann, Frank G, Funk, Sebastian, Gore-Langton, Georgia R, Flasche, Stefan, Jombart, Thibaut, Gibbs, Hamish P, Liu, Yang, Brady, Oliver, Bosse, Nikos I, Chan, Yung-Wai Desmond, Abbott, Sam, Clifford, Samuel, Atkins, Katherine E, Munday, James D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: European Centre for Disease Prevention and Control (ECDC) 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8662798/
https://www.ncbi.nlm.nih.gov/pubmed/34886944
http://dx.doi.org/10.2807/1560-7917.ES.2021.26.49.2001809
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author Nightingale, Emily S
Brady, Oliver J
Yakob, Laith
Gimma, Amy
Jit, Mark
Jarvis, Christopher I
Waterlow, Naomi R
Procter, Simon R
Auzenbergs, Megan
Tully, Damien C
Simons, David
Endo, Akira
Hellewell, Joel
Lowe, Rachel
Foss, Anna M
van Zandvoort, Kevin
Pearson, Carl AB
Showering, Alicia
Klepac, Petra
Medley, Graham
Quilty, Billy J
Diamond, Charlie
Edmunds, W John
Rosello, Alicia
Barnard, Rosanna C
Abbas, Kaja
Sherratt, Katharine
Williams, Jack
Meakin, Sophie R
Quaife, Matthew
Russell, Timothy W
Villabona-Arenas, C Julian
Prem, Kiesha
Sun, Fiona Yueqian
Davies, Nicholas G
Eggo, Rosalind M
Knight, Gwenan M
Kucharski, Adam J
Sandmann, Frank G
Funk, Sebastian
Gore-Langton, Georgia R
Flasche, Stefan
Jombart, Thibaut
Gibbs, Hamish P
Liu, Yang
Brady, Oliver
Bosse, Nikos I
Chan, Yung-Wai Desmond
Abbott, Sam
Clifford, Samuel
Atkins, Katherine E
Nightingale, Emily S
Munday, James D
author_facet Nightingale, Emily S
Brady, Oliver J
Yakob, Laith
Gimma, Amy
Jit, Mark
Jarvis, Christopher I
Waterlow, Naomi R
Procter, Simon R
Auzenbergs, Megan
Tully, Damien C
Simons, David
Endo, Akira
Hellewell, Joel
Lowe, Rachel
Foss, Anna M
van Zandvoort, Kevin
Pearson, Carl AB
Showering, Alicia
Klepac, Petra
Medley, Graham
Quilty, Billy J
Diamond, Charlie
Edmunds, W John
Rosello, Alicia
Barnard, Rosanna C
Abbas, Kaja
Sherratt, Katharine
Williams, Jack
Meakin, Sophie R
Quaife, Matthew
Russell, Timothy W
Villabona-Arenas, C Julian
Prem, Kiesha
Sun, Fiona Yueqian
Davies, Nicholas G
Eggo, Rosalind M
Knight, Gwenan M
Kucharski, Adam J
Sandmann, Frank G
Funk, Sebastian
Gore-Langton, Georgia R
Flasche, Stefan
Jombart, Thibaut
Gibbs, Hamish P
Liu, Yang
Brady, Oliver
Bosse, Nikos I
Chan, Yung-Wai Desmond
Abbott, Sam
Clifford, Samuel
Atkins, Katherine E
Nightingale, Emily S
Munday, James D
author_sort Nightingale, Emily S
collection PubMed
description BACKGROUND: Population-level mathematical models of outbreaks typically assume that disease transmission is not impacted by population density (‘frequency-dependent’) or that it increases linearly with density (‘density-dependent’). AIM: We sought evidence for the role of population density in SARS-CoV-2 transmission. METHODS: Using COVID-19-associated mortality data from England, we fitted multiple functional forms linking density with transmission. We projected forwards beyond lockdown to ascertain the consequences of different functional forms on infection resurgence. RESULTS: COVID-19-associated mortality data from England show evidence of increasing with population density until a saturating level, after adjusting for local age distribution, deprivation, proportion of ethnic minority population and proportion of key workers among the working population. Projections from a mathematical model that accounts for this observation deviate markedly from the current status quo for SARS-CoV-2 models which either assume linearity between density and transmission (30% of models) or no relationship at all (70%). Respectively, these classical model structures over- and underestimate the delay in infection resurgence following the release of lockdown. CONCLUSION: Identifying saturation points for given populations and including transmission terms that account for this feature will improve model accuracy and utility for the current and future pandemics.
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spelling pubmed-86627982022-01-05 The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 Nightingale, Emily S Brady, Oliver J Yakob, Laith Gimma, Amy Jit, Mark Jarvis, Christopher I Waterlow, Naomi R Procter, Simon R Auzenbergs, Megan Tully, Damien C Simons, David Endo, Akira Hellewell, Joel Lowe, Rachel Foss, Anna M van Zandvoort, Kevin Pearson, Carl AB Showering, Alicia Klepac, Petra Medley, Graham Quilty, Billy J Diamond, Charlie Edmunds, W John Rosello, Alicia Barnard, Rosanna C Abbas, Kaja Sherratt, Katharine Williams, Jack Meakin, Sophie R Quaife, Matthew Russell, Timothy W Villabona-Arenas, C Julian Prem, Kiesha Sun, Fiona Yueqian Davies, Nicholas G Eggo, Rosalind M Knight, Gwenan M Kucharski, Adam J Sandmann, Frank G Funk, Sebastian Gore-Langton, Georgia R Flasche, Stefan Jombart, Thibaut Gibbs, Hamish P Liu, Yang Brady, Oliver Bosse, Nikos I Chan, Yung-Wai Desmond Abbott, Sam Clifford, Samuel Atkins, Katherine E Nightingale, Emily S Munday, James D Euro Surveill Research BACKGROUND: Population-level mathematical models of outbreaks typically assume that disease transmission is not impacted by population density (‘frequency-dependent’) or that it increases linearly with density (‘density-dependent’). AIM: We sought evidence for the role of population density in SARS-CoV-2 transmission. METHODS: Using COVID-19-associated mortality data from England, we fitted multiple functional forms linking density with transmission. We projected forwards beyond lockdown to ascertain the consequences of different functional forms on infection resurgence. RESULTS: COVID-19-associated mortality data from England show evidence of increasing with population density until a saturating level, after adjusting for local age distribution, deprivation, proportion of ethnic minority population and proportion of key workers among the working population. Projections from a mathematical model that accounts for this observation deviate markedly from the current status quo for SARS-CoV-2 models which either assume linearity between density and transmission (30% of models) or no relationship at all (70%). Respectively, these classical model structures over- and underestimate the delay in infection resurgence following the release of lockdown. CONCLUSION: Identifying saturation points for given populations and including transmission terms that account for this feature will improve model accuracy and utility for the current and future pandemics. European Centre for Disease Prevention and Control (ECDC) 2021-12-09 /pmc/articles/PMC8662798/ /pubmed/34886944 http://dx.doi.org/10.2807/1560-7917.ES.2021.26.49.2001809 Text en This article is copyright of the authors or their affiliated institutions, 2021. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence, and indicate if changes were made.
spellingShingle Research
Nightingale, Emily S
Brady, Oliver J
Yakob, Laith
Gimma, Amy
Jit, Mark
Jarvis, Christopher I
Waterlow, Naomi R
Procter, Simon R
Auzenbergs, Megan
Tully, Damien C
Simons, David
Endo, Akira
Hellewell, Joel
Lowe, Rachel
Foss, Anna M
van Zandvoort, Kevin
Pearson, Carl AB
Showering, Alicia
Klepac, Petra
Medley, Graham
Quilty, Billy J
Diamond, Charlie
Edmunds, W John
Rosello, Alicia
Barnard, Rosanna C
Abbas, Kaja
Sherratt, Katharine
Williams, Jack
Meakin, Sophie R
Quaife, Matthew
Russell, Timothy W
Villabona-Arenas, C Julian
Prem, Kiesha
Sun, Fiona Yueqian
Davies, Nicholas G
Eggo, Rosalind M
Knight, Gwenan M
Kucharski, Adam J
Sandmann, Frank G
Funk, Sebastian
Gore-Langton, Georgia R
Flasche, Stefan
Jombart, Thibaut
Gibbs, Hamish P
Liu, Yang
Brady, Oliver
Bosse, Nikos I
Chan, Yung-Wai Desmond
Abbott, Sam
Clifford, Samuel
Atkins, Katherine E
Nightingale, Emily S
Munday, James D
The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
title The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
title_full The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
title_fullStr The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
title_full_unstemmed The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
title_short The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
title_sort importance of saturating density dependence for population-level predictions of sars-cov-2 resurgence compared with density-independent or linearly density-dependent models, england, 23 march to 31 july 2020
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8662798/
https://www.ncbi.nlm.nih.gov/pubmed/34886944
http://dx.doi.org/10.2807/1560-7917.ES.2021.26.49.2001809
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AT sandmannfrankg importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT funksebastian importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT gorelangtongeorgiar importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT flaschestefan importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT jombartthibaut importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT gibbshamishp importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT liuyang importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT bradyoliver importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT bossenikosi importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT chanyungwaidesmond importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT abbottsam importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT cliffordsamuel importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT atkinskatherinee importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT nightingaleemilys importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020
AT mundayjamesd importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020