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The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020
BACKGROUND: Population-level mathematical models of outbreaks typically assume that disease transmission is not impacted by population density (‘frequency-dependent’) or that it increases linearly with density (‘density-dependent’). AIM: We sought evidence for the role of population density in SARS-...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
European Centre for Disease Prevention and Control (ECDC)
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8662798/ https://www.ncbi.nlm.nih.gov/pubmed/34886944 http://dx.doi.org/10.2807/1560-7917.ES.2021.26.49.2001809 |
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author | Nightingale, Emily S Brady, Oliver J Yakob, Laith Gimma, Amy Jit, Mark Jarvis, Christopher I Waterlow, Naomi R Procter, Simon R Auzenbergs, Megan Tully, Damien C Simons, David Endo, Akira Hellewell, Joel Lowe, Rachel Foss, Anna M van Zandvoort, Kevin Pearson, Carl AB Showering, Alicia Klepac, Petra Medley, Graham Quilty, Billy J Diamond, Charlie Edmunds, W John Rosello, Alicia Barnard, Rosanna C Abbas, Kaja Sherratt, Katharine Williams, Jack Meakin, Sophie R Quaife, Matthew Russell, Timothy W Villabona-Arenas, C Julian Prem, Kiesha Sun, Fiona Yueqian Davies, Nicholas G Eggo, Rosalind M Knight, Gwenan M Kucharski, Adam J Sandmann, Frank G Funk, Sebastian Gore-Langton, Georgia R Flasche, Stefan Jombart, Thibaut Gibbs, Hamish P Liu, Yang Brady, Oliver Bosse, Nikos I Chan, Yung-Wai Desmond Abbott, Sam Clifford, Samuel Atkins, Katherine E Nightingale, Emily S Munday, James D |
author_facet | Nightingale, Emily S Brady, Oliver J Yakob, Laith Gimma, Amy Jit, Mark Jarvis, Christopher I Waterlow, Naomi R Procter, Simon R Auzenbergs, Megan Tully, Damien C Simons, David Endo, Akira Hellewell, Joel Lowe, Rachel Foss, Anna M van Zandvoort, Kevin Pearson, Carl AB Showering, Alicia Klepac, Petra Medley, Graham Quilty, Billy J Diamond, Charlie Edmunds, W John Rosello, Alicia Barnard, Rosanna C Abbas, Kaja Sherratt, Katharine Williams, Jack Meakin, Sophie R Quaife, Matthew Russell, Timothy W Villabona-Arenas, C Julian Prem, Kiesha Sun, Fiona Yueqian Davies, Nicholas G Eggo, Rosalind M Knight, Gwenan M Kucharski, Adam J Sandmann, Frank G Funk, Sebastian Gore-Langton, Georgia R Flasche, Stefan Jombart, Thibaut Gibbs, Hamish P Liu, Yang Brady, Oliver Bosse, Nikos I Chan, Yung-Wai Desmond Abbott, Sam Clifford, Samuel Atkins, Katherine E Nightingale, Emily S Munday, James D |
author_sort | Nightingale, Emily S |
collection | PubMed |
description | BACKGROUND: Population-level mathematical models of outbreaks typically assume that disease transmission is not impacted by population density (‘frequency-dependent’) or that it increases linearly with density (‘density-dependent’). AIM: We sought evidence for the role of population density in SARS-CoV-2 transmission. METHODS: Using COVID-19-associated mortality data from England, we fitted multiple functional forms linking density with transmission. We projected forwards beyond lockdown to ascertain the consequences of different functional forms on infection resurgence. RESULTS: COVID-19-associated mortality data from England show evidence of increasing with population density until a saturating level, after adjusting for local age distribution, deprivation, proportion of ethnic minority population and proportion of key workers among the working population. Projections from a mathematical model that accounts for this observation deviate markedly from the current status quo for SARS-CoV-2 models which either assume linearity between density and transmission (30% of models) or no relationship at all (70%). Respectively, these classical model structures over- and underestimate the delay in infection resurgence following the release of lockdown. CONCLUSION: Identifying saturation points for given populations and including transmission terms that account for this feature will improve model accuracy and utility for the current and future pandemics. |
format | Online Article Text |
id | pubmed-8662798 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | European Centre for Disease Prevention and Control (ECDC) |
record_format | MEDLINE/PubMed |
spelling | pubmed-86627982022-01-05 The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 Nightingale, Emily S Brady, Oliver J Yakob, Laith Gimma, Amy Jit, Mark Jarvis, Christopher I Waterlow, Naomi R Procter, Simon R Auzenbergs, Megan Tully, Damien C Simons, David Endo, Akira Hellewell, Joel Lowe, Rachel Foss, Anna M van Zandvoort, Kevin Pearson, Carl AB Showering, Alicia Klepac, Petra Medley, Graham Quilty, Billy J Diamond, Charlie Edmunds, W John Rosello, Alicia Barnard, Rosanna C Abbas, Kaja Sherratt, Katharine Williams, Jack Meakin, Sophie R Quaife, Matthew Russell, Timothy W Villabona-Arenas, C Julian Prem, Kiesha Sun, Fiona Yueqian Davies, Nicholas G Eggo, Rosalind M Knight, Gwenan M Kucharski, Adam J Sandmann, Frank G Funk, Sebastian Gore-Langton, Georgia R Flasche, Stefan Jombart, Thibaut Gibbs, Hamish P Liu, Yang Brady, Oliver Bosse, Nikos I Chan, Yung-Wai Desmond Abbott, Sam Clifford, Samuel Atkins, Katherine E Nightingale, Emily S Munday, James D Euro Surveill Research BACKGROUND: Population-level mathematical models of outbreaks typically assume that disease transmission is not impacted by population density (‘frequency-dependent’) or that it increases linearly with density (‘density-dependent’). AIM: We sought evidence for the role of population density in SARS-CoV-2 transmission. METHODS: Using COVID-19-associated mortality data from England, we fitted multiple functional forms linking density with transmission. We projected forwards beyond lockdown to ascertain the consequences of different functional forms on infection resurgence. RESULTS: COVID-19-associated mortality data from England show evidence of increasing with population density until a saturating level, after adjusting for local age distribution, deprivation, proportion of ethnic minority population and proportion of key workers among the working population. Projections from a mathematical model that accounts for this observation deviate markedly from the current status quo for SARS-CoV-2 models which either assume linearity between density and transmission (30% of models) or no relationship at all (70%). Respectively, these classical model structures over- and underestimate the delay in infection resurgence following the release of lockdown. CONCLUSION: Identifying saturation points for given populations and including transmission terms that account for this feature will improve model accuracy and utility for the current and future pandemics. European Centre for Disease Prevention and Control (ECDC) 2021-12-09 /pmc/articles/PMC8662798/ /pubmed/34886944 http://dx.doi.org/10.2807/1560-7917.ES.2021.26.49.2001809 Text en This article is copyright of the authors or their affiliated institutions, 2021. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence, and indicate if changes were made. |
spellingShingle | Research Nightingale, Emily S Brady, Oliver J Yakob, Laith Gimma, Amy Jit, Mark Jarvis, Christopher I Waterlow, Naomi R Procter, Simon R Auzenbergs, Megan Tully, Damien C Simons, David Endo, Akira Hellewell, Joel Lowe, Rachel Foss, Anna M van Zandvoort, Kevin Pearson, Carl AB Showering, Alicia Klepac, Petra Medley, Graham Quilty, Billy J Diamond, Charlie Edmunds, W John Rosello, Alicia Barnard, Rosanna C Abbas, Kaja Sherratt, Katharine Williams, Jack Meakin, Sophie R Quaife, Matthew Russell, Timothy W Villabona-Arenas, C Julian Prem, Kiesha Sun, Fiona Yueqian Davies, Nicholas G Eggo, Rosalind M Knight, Gwenan M Kucharski, Adam J Sandmann, Frank G Funk, Sebastian Gore-Langton, Georgia R Flasche, Stefan Jombart, Thibaut Gibbs, Hamish P Liu, Yang Brady, Oliver Bosse, Nikos I Chan, Yung-Wai Desmond Abbott, Sam Clifford, Samuel Atkins, Katherine E Nightingale, Emily S Munday, James D The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 |
title | The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 |
title_full | The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 |
title_fullStr | The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 |
title_full_unstemmed | The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 |
title_short | The importance of saturating density dependence for population-level predictions of SARS-CoV-2 resurgence compared with density-independent or linearly density-dependent models, England, 23 March to 31 July 2020 |
title_sort | importance of saturating density dependence for population-level predictions of sars-cov-2 resurgence compared with density-independent or linearly density-dependent models, england, 23 march to 31 july 2020 |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8662798/ https://www.ncbi.nlm.nih.gov/pubmed/34886944 http://dx.doi.org/10.2807/1560-7917.ES.2021.26.49.2001809 |
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importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020 AT cliffordsamuel importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020 AT atkinskatherinee importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020 AT nightingaleemilys importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020 AT mundayjamesd importanceofsaturatingdensitydependenceforpopulationlevelpredictionsofsarscov2resurgencecomparedwithdensityindependentorlinearlydensitydependentmodelsengland23marchto31july2020 |