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A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores

PREMISE: The great variation of genome size (C‐value) across land plants is linked to various adaptative features. Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have...

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Autores principales: Kuo, Li‐Yaung, Tang, Sheng Kai, Kao, Tzu‐Tong, Ebihara, Atsushi, Fawcett, Susan, Hsiao, Min‐Chien, Shinohara, Wataru, Dauphin, Benjamin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8664048/
https://www.ncbi.nlm.nih.gov/pubmed/34938613
http://dx.doi.org/10.1002/aps3.11452
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author Kuo, Li‐Yaung
Tang, Sheng Kai
Kao, Tzu‐Tong
Ebihara, Atsushi
Fawcett, Susan
Hsiao, Min‐Chien
Shinohara, Wataru
Dauphin, Benjamin
author_facet Kuo, Li‐Yaung
Tang, Sheng Kai
Kao, Tzu‐Tong
Ebihara, Atsushi
Fawcett, Susan
Hsiao, Min‐Chien
Shinohara, Wataru
Dauphin, Benjamin
author_sort Kuo, Li‐Yaung
collection PubMed
description PREMISE: The great variation of genome size (C‐value) across land plants is linked to various adaptative features. Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have been derived from herbarium specimens; however, the herbarium spores of some ferns remain highly viable for decades and are thus promising for further investigation. To explore this possibility, we evaluated herbarium spore collections of Ophioglossaceae ferns using FCM. METHODS: Flow cytometry was conducted on 24 spore samples, representing eight of the 12 genera of the Ophioglossaceae, using specimens ranging in age from 2.6 to 111 years obtained from five herbaria. RESULTS: Regardless of the genus or the source herbarium, high‐quality C‐value data were generated from 17 samples, with the oldest being 26 years old. Estimates of the C‐values from sporophytic tissues of known ploidy did not reveal any evidence of apomixis for the species surveyed here. We also detected a pronounced genome downsizing in Sceptridium polyploids. DISCUSSION: The recent success of FCM for C‐value estimation using spores provides a much more convenient method of utilizing “dry” refrigerated materials. We demonstrate here that herbarium spores of some ferns are also promising for this use, even for older specimens.
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spelling pubmed-86640482021-12-21 A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores Kuo, Li‐Yaung Tang, Sheng Kai Kao, Tzu‐Tong Ebihara, Atsushi Fawcett, Susan Hsiao, Min‐Chien Shinohara, Wataru Dauphin, Benjamin Appl Plant Sci Application Article PREMISE: The great variation of genome size (C‐value) across land plants is linked to various adaptative features. Flow cytometry (FCM), the standard approach to estimating C‐values, relies mostly on fresh materials, performing poorly when used with herbarium materials. No fern C‐value reports have been derived from herbarium specimens; however, the herbarium spores of some ferns remain highly viable for decades and are thus promising for further investigation. To explore this possibility, we evaluated herbarium spore collections of Ophioglossaceae ferns using FCM. METHODS: Flow cytometry was conducted on 24 spore samples, representing eight of the 12 genera of the Ophioglossaceae, using specimens ranging in age from 2.6 to 111 years obtained from five herbaria. RESULTS: Regardless of the genus or the source herbarium, high‐quality C‐value data were generated from 17 samples, with the oldest being 26 years old. Estimates of the C‐values from sporophytic tissues of known ploidy did not reveal any evidence of apomixis for the species surveyed here. We also detected a pronounced genome downsizing in Sceptridium polyploids. DISCUSSION: The recent success of FCM for C‐value estimation using spores provides a much more convenient method of utilizing “dry” refrigerated materials. We demonstrate here that herbarium spores of some ferns are also promising for this use, even for older specimens. John Wiley and Sons Inc. 2021-12-07 /pmc/articles/PMC8664048/ /pubmed/34938613 http://dx.doi.org/10.1002/aps3.11452 Text en © 2021 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Application Article
Kuo, Li‐Yaung
Tang, Sheng Kai
Kao, Tzu‐Tong
Ebihara, Atsushi
Fawcett, Susan
Hsiao, Min‐Chien
Shinohara, Wataru
Dauphin, Benjamin
A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores
title A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores
title_full A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores
title_fullStr A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores
title_full_unstemmed A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores
title_short A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores
title_sort dormant resource for genome size estimation in ferns: c‐value inference of the ophioglossaceae using herbarium specimen spores
topic Application Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8664048/
https://www.ncbi.nlm.nih.gov/pubmed/34938613
http://dx.doi.org/10.1002/aps3.11452
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