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Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes
OBJECTIVE: This study investigated the nature of shared transcriptomic alterations in PBMs from periodontitis and atherosclerosis to unravel molecular mechanisms underpinning their association. METHODS: Gene expression data from PBMs from patients with periodontitis and those with atherosclerosis we...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8664523/ https://www.ncbi.nlm.nih.gov/pubmed/34899963 http://dx.doi.org/10.1155/2021/1498431 |
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author | Ning, Wanchen Ma, Yihong Li, Simin Wang, Xin Pan, Hongying Wei, Chenxuan Zhang, Shaochuan Bai, Dongying Liu, Xiangqiong Deng, Yupei Acharya, Aneesha Pelekos, George Savkovic, Vuk Li, Hanluo Gaus, Sebastian Haak, Rainer Schmalz, Gerhard Ziebolz, Dirk Ma, Yanbo Xu, Yuzhen |
author_facet | Ning, Wanchen Ma, Yihong Li, Simin Wang, Xin Pan, Hongying Wei, Chenxuan Zhang, Shaochuan Bai, Dongying Liu, Xiangqiong Deng, Yupei Acharya, Aneesha Pelekos, George Savkovic, Vuk Li, Hanluo Gaus, Sebastian Haak, Rainer Schmalz, Gerhard Ziebolz, Dirk Ma, Yanbo Xu, Yuzhen |
author_sort | Ning, Wanchen |
collection | PubMed |
description | OBJECTIVE: This study investigated the nature of shared transcriptomic alterations in PBMs from periodontitis and atherosclerosis to unravel molecular mechanisms underpinning their association. METHODS: Gene expression data from PBMs from patients with periodontitis and those with atherosclerosis were each downloaded from the GEO database. Differentially expressed genes (DEGs) in periodontitis and atherosclerosis were identified through differential gene expression analysis. The disease-related known genes related to periodontitis and atherosclerosis each were downloaded from the DisGeNET database. A Venn diagram was constructed to identify crosstalk genes from four categories: DEGs expressed in periodontitis, periodontitis-related known genes, DEGs expressed in atherosclerosis, and atherosclerosis-related known genes. A weighted gene coexpression network analysis (WGCNA) was performed to identify significant coexpression modules, and then, coexpressed gene interaction networks belonging to each significant module were constructed to identify the core crosstalk genes. RESULTS: Functional enrichment analysis of significant modules obtained by WGCNA analysis showed that several pathways might play the critical crosstalk role in linking both diseases, including bacterial invasion of epithelial cells, platelet activation, and Mitogen-Activated Protein Kinases (MAPK) signaling. By constructing the gene interaction network of significant modules, the core crosstalk genes in each module were identified and included: for GSE23746 dataset, RASGRP2 in the blue module and VAMP7 and SNX3 in the green module, as well as HMGB1 and SUMO1 in the turquoise module were identified; for GSE61490 dataset, SEC61G, PSMB2, SELPLG, and FIBP in the turquoise module were identified. CONCLUSION: Exploration of available transcriptomic datasets revealed core crosstalk genes (RASGRP2, VAMP7, SNX3, HMGB1, SUMO1, SEC61G, PSMB2, SELPLG, and FIBP) and significant pathways (bacterial invasion of epithelial cells, platelet activation, and MAPK signaling) as top candidate molecular linkage mechanisms between atherosclerosis and periodontitis. |
format | Online Article Text |
id | pubmed-8664523 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-86645232021-12-11 Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes Ning, Wanchen Ma, Yihong Li, Simin Wang, Xin Pan, Hongying Wei, Chenxuan Zhang, Shaochuan Bai, Dongying Liu, Xiangqiong Deng, Yupei Acharya, Aneesha Pelekos, George Savkovic, Vuk Li, Hanluo Gaus, Sebastian Haak, Rainer Schmalz, Gerhard Ziebolz, Dirk Ma, Yanbo Xu, Yuzhen Comput Math Methods Med Research Article OBJECTIVE: This study investigated the nature of shared transcriptomic alterations in PBMs from periodontitis and atherosclerosis to unravel molecular mechanisms underpinning their association. METHODS: Gene expression data from PBMs from patients with periodontitis and those with atherosclerosis were each downloaded from the GEO database. Differentially expressed genes (DEGs) in periodontitis and atherosclerosis were identified through differential gene expression analysis. The disease-related known genes related to periodontitis and atherosclerosis each were downloaded from the DisGeNET database. A Venn diagram was constructed to identify crosstalk genes from four categories: DEGs expressed in periodontitis, periodontitis-related known genes, DEGs expressed in atherosclerosis, and atherosclerosis-related known genes. A weighted gene coexpression network analysis (WGCNA) was performed to identify significant coexpression modules, and then, coexpressed gene interaction networks belonging to each significant module were constructed to identify the core crosstalk genes. RESULTS: Functional enrichment analysis of significant modules obtained by WGCNA analysis showed that several pathways might play the critical crosstalk role in linking both diseases, including bacterial invasion of epithelial cells, platelet activation, and Mitogen-Activated Protein Kinases (MAPK) signaling. By constructing the gene interaction network of significant modules, the core crosstalk genes in each module were identified and included: for GSE23746 dataset, RASGRP2 in the blue module and VAMP7 and SNX3 in the green module, as well as HMGB1 and SUMO1 in the turquoise module were identified; for GSE61490 dataset, SEC61G, PSMB2, SELPLG, and FIBP in the turquoise module were identified. CONCLUSION: Exploration of available transcriptomic datasets revealed core crosstalk genes (RASGRP2, VAMP7, SNX3, HMGB1, SUMO1, SEC61G, PSMB2, SELPLG, and FIBP) and significant pathways (bacterial invasion of epithelial cells, platelet activation, and MAPK signaling) as top candidate molecular linkage mechanisms between atherosclerosis and periodontitis. Hindawi 2021-12-03 /pmc/articles/PMC8664523/ /pubmed/34899963 http://dx.doi.org/10.1155/2021/1498431 Text en Copyright © 2021 Wanchen Ning et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Ning, Wanchen Ma, Yihong Li, Simin Wang, Xin Pan, Hongying Wei, Chenxuan Zhang, Shaochuan Bai, Dongying Liu, Xiangqiong Deng, Yupei Acharya, Aneesha Pelekos, George Savkovic, Vuk Li, Hanluo Gaus, Sebastian Haak, Rainer Schmalz, Gerhard Ziebolz, Dirk Ma, Yanbo Xu, Yuzhen Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes |
title | Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes |
title_full | Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes |
title_fullStr | Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes |
title_full_unstemmed | Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes |
title_short | Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes |
title_sort | shared molecular mechanisms between atherosclerosis and periodontitis by analyzing the transcriptomic alterations of peripheral blood monocytes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8664523/ https://www.ncbi.nlm.nih.gov/pubmed/34899963 http://dx.doi.org/10.1155/2021/1498431 |
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