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NaViA: a program for the visual analysis of complex mass spectra

MOTIVATION: Native mass spectrometry is now a well-established method for the investigation of protein complexes, specifically their subunit stoichiometry and ligand binding properties. Recent advances allowing the analysis of complex mixtures lead to an increasing diversity and complexity in the sp...

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Autores principales: Quetschlich, Daniel, Esser, Tim K, Newport, Thomas D, Fiorentino, Francesco, Shutin, Denis, Chen, Siyun, Davis, Rachel, Lovera, Silvia, Liko, Idlir, Stansfeld, Phillip J, Robinson, Carol V
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8665753/
https://www.ncbi.nlm.nih.gov/pubmed/34145888
http://dx.doi.org/10.1093/bioinformatics/btab436
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author Quetschlich, Daniel
Esser, Tim K
Newport, Thomas D
Fiorentino, Francesco
Shutin, Denis
Chen, Siyun
Davis, Rachel
Lovera, Silvia
Liko, Idlir
Stansfeld, Phillip J
Robinson, Carol V
author_facet Quetschlich, Daniel
Esser, Tim K
Newport, Thomas D
Fiorentino, Francesco
Shutin, Denis
Chen, Siyun
Davis, Rachel
Lovera, Silvia
Liko, Idlir
Stansfeld, Phillip J
Robinson, Carol V
author_sort Quetschlich, Daniel
collection PubMed
description MOTIVATION: Native mass spectrometry is now a well-established method for the investigation of protein complexes, specifically their subunit stoichiometry and ligand binding properties. Recent advances allowing the analysis of complex mixtures lead to an increasing diversity and complexity in the spectra obtained. These spectra can be time-consuming to tackle through manual assignment and challenging for automated approaches. RESULTS: Native Mass Spectrometry Visual Analyser is a web-based tool to augment the manual process of peak assignment. In addition to matching masses to the stoichiometry of its component subunits, it allows raw data processing, assignment and annotation and permits mass spectra to be shared with their respective interpretation. AVAILABILITY AND IMPLEMENTATION: NaViA is open-source and can be accessed online under https://navia.ms. The source code and documentation can be accessed at https://github.com/d-que/navia, under the BSD 2-Clause licence. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-86657532021-12-13 NaViA: a program for the visual analysis of complex mass spectra Quetschlich, Daniel Esser, Tim K Newport, Thomas D Fiorentino, Francesco Shutin, Denis Chen, Siyun Davis, Rachel Lovera, Silvia Liko, Idlir Stansfeld, Phillip J Robinson, Carol V Bioinformatics Applications Notes MOTIVATION: Native mass spectrometry is now a well-established method for the investigation of protein complexes, specifically their subunit stoichiometry and ligand binding properties. Recent advances allowing the analysis of complex mixtures lead to an increasing diversity and complexity in the spectra obtained. These spectra can be time-consuming to tackle through manual assignment and challenging for automated approaches. RESULTS: Native Mass Spectrometry Visual Analyser is a web-based tool to augment the manual process of peak assignment. In addition to matching masses to the stoichiometry of its component subunits, it allows raw data processing, assignment and annotation and permits mass spectra to be shared with their respective interpretation. AVAILABILITY AND IMPLEMENTATION: NaViA is open-source and can be accessed online under https://navia.ms. The source code and documentation can be accessed at https://github.com/d-que/navia, under the BSD 2-Clause licence. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2021-06-19 /pmc/articles/PMC8665753/ /pubmed/34145888 http://dx.doi.org/10.1093/bioinformatics/btab436 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Quetschlich, Daniel
Esser, Tim K
Newport, Thomas D
Fiorentino, Francesco
Shutin, Denis
Chen, Siyun
Davis, Rachel
Lovera, Silvia
Liko, Idlir
Stansfeld, Phillip J
Robinson, Carol V
NaViA: a program for the visual analysis of complex mass spectra
title NaViA: a program for the visual analysis of complex mass spectra
title_full NaViA: a program for the visual analysis of complex mass spectra
title_fullStr NaViA: a program for the visual analysis of complex mass spectra
title_full_unstemmed NaViA: a program for the visual analysis of complex mass spectra
title_short NaViA: a program for the visual analysis of complex mass spectra
title_sort navia: a program for the visual analysis of complex mass spectra
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8665753/
https://www.ncbi.nlm.nih.gov/pubmed/34145888
http://dx.doi.org/10.1093/bioinformatics/btab436
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