SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction

SUMMARY: SANS serif is a novel software for alignment-free, whole-genome-based phylogeny estimation that follows a pangenomic approach to efficiently calculate a set of splits in a phylogenetic tree or network. AVAILABILITY AND IMPLEMENTATION: Implemented in C++ and supported on Linux, MacOS and Win...

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Detalles Bibliográficos
Autores principales: Rempel, Andreas, Wittler, Roland
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8665756/
https://www.ncbi.nlm.nih.gov/pubmed/34132752
http://dx.doi.org/10.1093/bioinformatics/btab444
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author Rempel, Andreas
Wittler, Roland
author_facet Rempel, Andreas
Wittler, Roland
author_sort Rempel, Andreas
collection PubMed
description SUMMARY: SANS serif is a novel software for alignment-free, whole-genome-based phylogeny estimation that follows a pangenomic approach to efficiently calculate a set of splits in a phylogenetic tree or network. AVAILABILITY AND IMPLEMENTATION: Implemented in C++ and supported on Linux, MacOS and Windows. The source code is freely available for download at https://gitlab.ub.uni-bielefeld.de/gi/sans. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-86657562021-12-13 SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction Rempel, Andreas Wittler, Roland Bioinformatics Applications Notes SUMMARY: SANS serif is a novel software for alignment-free, whole-genome-based phylogeny estimation that follows a pangenomic approach to efficiently calculate a set of splits in a phylogenetic tree or network. AVAILABILITY AND IMPLEMENTATION: Implemented in C++ and supported on Linux, MacOS and Windows. The source code is freely available for download at https://gitlab.ub.uni-bielefeld.de/gi/sans. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2021-06-16 /pmc/articles/PMC8665756/ /pubmed/34132752 http://dx.doi.org/10.1093/bioinformatics/btab444 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Rempel, Andreas
Wittler, Roland
SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
title SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
title_full SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
title_fullStr SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
title_full_unstemmed SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
title_short SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
title_sort sans serif: alignment-free, whole-genome-based phylogenetic reconstruction
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8665756/
https://www.ncbi.nlm.nih.gov/pubmed/34132752
http://dx.doi.org/10.1093/bioinformatics/btab444
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