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CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer

BACKGROUND: αB-Crystallin (CRYAB) is differentially expressed in various tumors. However, the correlation between CRYAB and immune cell infiltration in colorectal cancer (CRC) remains unclear. MATERIALS & METHODS: Kaplan–Meier survival curves in The Cancer Genome Atlas (TCGA) were used to evalua...

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Autores principales: Deng, Junsheng, Chen, Xiaoli, Zhan, Ting, Chen, Mengge, Yan, Xisheng, Huang, Xiaodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667716/
https://www.ncbi.nlm.nih.gov/pubmed/34966587
http://dx.doi.org/10.7717/peerj.12578
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author Deng, Junsheng
Chen, Xiaoli
Zhan, Ting
Chen, Mengge
Yan, Xisheng
Huang, Xiaodong
author_facet Deng, Junsheng
Chen, Xiaoli
Zhan, Ting
Chen, Mengge
Yan, Xisheng
Huang, Xiaodong
author_sort Deng, Junsheng
collection PubMed
description BACKGROUND: αB-Crystallin (CRYAB) is differentially expressed in various tumors. However, the correlation between CRYAB and immune cell infiltration in colorectal cancer (CRC) remains unclear. MATERIALS & METHODS: Kaplan–Meier survival curves in The Cancer Genome Atlas (TCGA) were used to evaluate the relationship between CRYAB expression and both overall survival and progression-free survival. The relationships between CRYAB expression and infiltrating immune cells and their corresponding gene marker sets were examined using the TIMER database. RESULTS: The expression of CRYAB was lower in CRC tumor tissues than in normal tissues (P < 0.05). High CRYAB gene expression and high levels of CRYAB gene methylation were correlated with high-grade malignant tumors and more advanced tumor, nodes and metastasis (TNM) cancer stages. In addition, in colorectal cancer, there was a positive correlation between CRYAB expression and immune infiltrating cells including neutrophils, macrophages, CD8 + T cells, and CD4 + T cells, as well as immune-related genes including CD2, CD3D, and CD3E. Methylation sites such as cg13084335, cg15545878, cg13210534, and cg15318568 were positively correlated with low expression of CRYAB. CONCLUSION: Because CRYAB likely plays an important role in immune cell infiltration, it may be a potential tumor-suppressor gene in CRC and a potential novel therapeutic target and predictive biomarker for colorectal cancer (CRC).
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spelling pubmed-86677162021-12-28 CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer Deng, Junsheng Chen, Xiaoli Zhan, Ting Chen, Mengge Yan, Xisheng Huang, Xiaodong PeerJ Bioinformatics BACKGROUND: αB-Crystallin (CRYAB) is differentially expressed in various tumors. However, the correlation between CRYAB and immune cell infiltration in colorectal cancer (CRC) remains unclear. MATERIALS & METHODS: Kaplan–Meier survival curves in The Cancer Genome Atlas (TCGA) were used to evaluate the relationship between CRYAB expression and both overall survival and progression-free survival. The relationships between CRYAB expression and infiltrating immune cells and their corresponding gene marker sets were examined using the TIMER database. RESULTS: The expression of CRYAB was lower in CRC tumor tissues than in normal tissues (P < 0.05). High CRYAB gene expression and high levels of CRYAB gene methylation were correlated with high-grade malignant tumors and more advanced tumor, nodes and metastasis (TNM) cancer stages. In addition, in colorectal cancer, there was a positive correlation between CRYAB expression and immune infiltrating cells including neutrophils, macrophages, CD8 + T cells, and CD4 + T cells, as well as immune-related genes including CD2, CD3D, and CD3E. Methylation sites such as cg13084335, cg15545878, cg13210534, and cg15318568 were positively correlated with low expression of CRYAB. CONCLUSION: Because CRYAB likely plays an important role in immune cell infiltration, it may be a potential tumor-suppressor gene in CRC and a potential novel therapeutic target and predictive biomarker for colorectal cancer (CRC). PeerJ Inc. 2021-12-10 /pmc/articles/PMC8667716/ /pubmed/34966587 http://dx.doi.org/10.7717/peerj.12578 Text en ©2021 Deng et al. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by-nc/4.0/) , which permits using, remixing, and building upon the work non-commercially, as long as it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Deng, Junsheng
Chen, Xiaoli
Zhan, Ting
Chen, Mengge
Yan, Xisheng
Huang, Xiaodong
CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
title CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
title_full CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
title_fullStr CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
title_full_unstemmed CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
title_short CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
title_sort cryab predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667716/
https://www.ncbi.nlm.nih.gov/pubmed/34966587
http://dx.doi.org/10.7717/peerj.12578
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