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CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer
BACKGROUND: αB-Crystallin (CRYAB) is differentially expressed in various tumors. However, the correlation between CRYAB and immune cell infiltration in colorectal cancer (CRC) remains unclear. MATERIALS & METHODS: Kaplan–Meier survival curves in The Cancer Genome Atlas (TCGA) were used to evalua...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667716/ https://www.ncbi.nlm.nih.gov/pubmed/34966587 http://dx.doi.org/10.7717/peerj.12578 |
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author | Deng, Junsheng Chen, Xiaoli Zhan, Ting Chen, Mengge Yan, Xisheng Huang, Xiaodong |
author_facet | Deng, Junsheng Chen, Xiaoli Zhan, Ting Chen, Mengge Yan, Xisheng Huang, Xiaodong |
author_sort | Deng, Junsheng |
collection | PubMed |
description | BACKGROUND: αB-Crystallin (CRYAB) is differentially expressed in various tumors. However, the correlation between CRYAB and immune cell infiltration in colorectal cancer (CRC) remains unclear. MATERIALS & METHODS: Kaplan–Meier survival curves in The Cancer Genome Atlas (TCGA) were used to evaluate the relationship between CRYAB expression and both overall survival and progression-free survival. The relationships between CRYAB expression and infiltrating immune cells and their corresponding gene marker sets were examined using the TIMER database. RESULTS: The expression of CRYAB was lower in CRC tumor tissues than in normal tissues (P < 0.05). High CRYAB gene expression and high levels of CRYAB gene methylation were correlated with high-grade malignant tumors and more advanced tumor, nodes and metastasis (TNM) cancer stages. In addition, in colorectal cancer, there was a positive correlation between CRYAB expression and immune infiltrating cells including neutrophils, macrophages, CD8 + T cells, and CD4 + T cells, as well as immune-related genes including CD2, CD3D, and CD3E. Methylation sites such as cg13084335, cg15545878, cg13210534, and cg15318568 were positively correlated with low expression of CRYAB. CONCLUSION: Because CRYAB likely plays an important role in immune cell infiltration, it may be a potential tumor-suppressor gene in CRC and a potential novel therapeutic target and predictive biomarker for colorectal cancer (CRC). |
format | Online Article Text |
id | pubmed-8667716 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86677162021-12-28 CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer Deng, Junsheng Chen, Xiaoli Zhan, Ting Chen, Mengge Yan, Xisheng Huang, Xiaodong PeerJ Bioinformatics BACKGROUND: αB-Crystallin (CRYAB) is differentially expressed in various tumors. However, the correlation between CRYAB and immune cell infiltration in colorectal cancer (CRC) remains unclear. MATERIALS & METHODS: Kaplan–Meier survival curves in The Cancer Genome Atlas (TCGA) were used to evaluate the relationship between CRYAB expression and both overall survival and progression-free survival. The relationships between CRYAB expression and infiltrating immune cells and their corresponding gene marker sets were examined using the TIMER database. RESULTS: The expression of CRYAB was lower in CRC tumor tissues than in normal tissues (P < 0.05). High CRYAB gene expression and high levels of CRYAB gene methylation were correlated with high-grade malignant tumors and more advanced tumor, nodes and metastasis (TNM) cancer stages. In addition, in colorectal cancer, there was a positive correlation between CRYAB expression and immune infiltrating cells including neutrophils, macrophages, CD8 + T cells, and CD4 + T cells, as well as immune-related genes including CD2, CD3D, and CD3E. Methylation sites such as cg13084335, cg15545878, cg13210534, and cg15318568 were positively correlated with low expression of CRYAB. CONCLUSION: Because CRYAB likely plays an important role in immune cell infiltration, it may be a potential tumor-suppressor gene in CRC and a potential novel therapeutic target and predictive biomarker for colorectal cancer (CRC). PeerJ Inc. 2021-12-10 /pmc/articles/PMC8667716/ /pubmed/34966587 http://dx.doi.org/10.7717/peerj.12578 Text en ©2021 Deng et al. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by-nc/4.0/) , which permits using, remixing, and building upon the work non-commercially, as long as it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Deng, Junsheng Chen, Xiaoli Zhan, Ting Chen, Mengge Yan, Xisheng Huang, Xiaodong CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer |
title | CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer |
title_full | CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer |
title_fullStr | CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer |
title_full_unstemmed | CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer |
title_short | CRYAB predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer |
title_sort | cryab predicts clinical prognosis and is associated with immunocyte infiltration in colorectal cancer |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667716/ https://www.ncbi.nlm.nih.gov/pubmed/34966587 http://dx.doi.org/10.7717/peerj.12578 |
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