Complete chloroplast genome of the rare medicinal vegetable Allium hookeri

Allium hookeri is a rare medicinal plant with unique flavor. In this study, the first complete chloroplast (cp) genome of A. hookeri was sequenced and assembled based on the next generation sequencing. The cp genome is 153,592 bp in length, including a large single-copy (LSC) region of 82,609 bp, a...

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Autores principales: Ren, Fengming, Wang, Liqiang, Zhuo, Wei, Chen, Dongliang, Huang, Hongyan, Zhang, Lansheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667927/
https://www.ncbi.nlm.nih.gov/pubmed/34912953
http://dx.doi.org/10.1080/23802359.2021.2003262
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author Ren, Fengming
Wang, Liqiang
Zhuo, Wei
Chen, Dongliang
Huang, Hongyan
Zhang, Lansheng
author_facet Ren, Fengming
Wang, Liqiang
Zhuo, Wei
Chen, Dongliang
Huang, Hongyan
Zhang, Lansheng
author_sort Ren, Fengming
collection PubMed
description Allium hookeri is a rare medicinal plant with unique flavor. In this study, the first complete chloroplast (cp) genome of A. hookeri was sequenced and assembled based on the next generation sequencing. The cp genome is 153,592 bp in length, including a large single-copy (LSC) region of 82,609 bp, a small single-copy (SSC) region of 17,487 bp, and a pair of inverted repeat (IR) regions of 26,748 bp each. The genome encodes 131 genes, including 86 protein-coding genes, 39 tRNA genes, and six rRNA genes. The GC content of whole genome is 36.99%. The phylogenetic analysis based on 24 complete cp sequences revealed that A. hookeri was at the base of the phylogenetic tree, indicating an older species in the Allium genus.
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spelling pubmed-86679272021-12-14 Complete chloroplast genome of the rare medicinal vegetable Allium hookeri Ren, Fengming Wang, Liqiang Zhuo, Wei Chen, Dongliang Huang, Hongyan Zhang, Lansheng Mitochondrial DNA B Resour Mitogenome Announcement Allium hookeri is a rare medicinal plant with unique flavor. In this study, the first complete chloroplast (cp) genome of A. hookeri was sequenced and assembled based on the next generation sequencing. The cp genome is 153,592 bp in length, including a large single-copy (LSC) region of 82,609 bp, a small single-copy (SSC) region of 17,487 bp, and a pair of inverted repeat (IR) regions of 26,748 bp each. The genome encodes 131 genes, including 86 protein-coding genes, 39 tRNA genes, and six rRNA genes. The GC content of whole genome is 36.99%. The phylogenetic analysis based on 24 complete cp sequences revealed that A. hookeri was at the base of the phylogenetic tree, indicating an older species in the Allium genus. Taylor & Francis 2021-12-09 /pmc/articles/PMC8667927/ /pubmed/34912953 http://dx.doi.org/10.1080/23802359.2021.2003262 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ren, Fengming
Wang, Liqiang
Zhuo, Wei
Chen, Dongliang
Huang, Hongyan
Zhang, Lansheng
Complete chloroplast genome of the rare medicinal vegetable Allium hookeri
title Complete chloroplast genome of the rare medicinal vegetable Allium hookeri
title_full Complete chloroplast genome of the rare medicinal vegetable Allium hookeri
title_fullStr Complete chloroplast genome of the rare medicinal vegetable Allium hookeri
title_full_unstemmed Complete chloroplast genome of the rare medicinal vegetable Allium hookeri
title_short Complete chloroplast genome of the rare medicinal vegetable Allium hookeri
title_sort complete chloroplast genome of the rare medicinal vegetable allium hookeri
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667927/
https://www.ncbi.nlm.nih.gov/pubmed/34912953
http://dx.doi.org/10.1080/23802359.2021.2003262
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