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Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae)
Gynostemma microspermum C. Y. Wu et S. K. Chen is an endemic creeping herbaceous species mainly distributed in dense forests on limestone in northwestern China. Here, the complete chloroplast genome sequence of G. microspermum was obtained by Illumina pair-end sequencing. The circular complete chlor...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667937/ https://www.ncbi.nlm.nih.gov/pubmed/34912963 http://dx.doi.org/10.1080/23802359.2021.2007811 |
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author | Zhang, Xiao Chen, Xiaodan Zhang, Hao Zhao, Yuemei Ju, Miaomiao Zhao, Guifang |
author_facet | Zhang, Xiao Chen, Xiaodan Zhang, Hao Zhao, Yuemei Ju, Miaomiao Zhao, Guifang |
author_sort | Zhang, Xiao |
collection | PubMed |
description | Gynostemma microspermum C. Y. Wu et S. K. Chen is an endemic creeping herbaceous species mainly distributed in dense forests on limestone in northwestern China. Here, the complete chloroplast genome sequence of G. microspermum was obtained by Illumina pair-end sequencing. The circular complete chloroplast genome of G. microspermum is 158,692 bp in length and contains a large single copy region (87,452 bp), a small single copy region (19,068 bp) and two short inverted repeat regions (26,086 bp). The genome sequence encodes 133 genes including 87 protein-coding genes, 37 transfer RNA genes, 8 ribosomal RNA genes and 1 pseudogene. The maximum likelihood (ML) phylogeny estimation shows that G. microspermum is sister to all other analyzed species of the genus Gynostemma with high bootstrap support. |
format | Online Article Text |
id | pubmed-8667937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-86679372021-12-14 Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae) Zhang, Xiao Chen, Xiaodan Zhang, Hao Zhao, Yuemei Ju, Miaomiao Zhao, Guifang Mitochondrial DNA B Resour Mitogenome Announcement Gynostemma microspermum C. Y. Wu et S. K. Chen is an endemic creeping herbaceous species mainly distributed in dense forests on limestone in northwestern China. Here, the complete chloroplast genome sequence of G. microspermum was obtained by Illumina pair-end sequencing. The circular complete chloroplast genome of G. microspermum is 158,692 bp in length and contains a large single copy region (87,452 bp), a small single copy region (19,068 bp) and two short inverted repeat regions (26,086 bp). The genome sequence encodes 133 genes including 87 protein-coding genes, 37 transfer RNA genes, 8 ribosomal RNA genes and 1 pseudogene. The maximum likelihood (ML) phylogeny estimation shows that G. microspermum is sister to all other analyzed species of the genus Gynostemma with high bootstrap support. Taylor & Francis 2021-12-10 /pmc/articles/PMC8667937/ /pubmed/34912963 http://dx.doi.org/10.1080/23802359.2021.2007811 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Xiao Chen, Xiaodan Zhang, Hao Zhao, Yuemei Ju, Miaomiao Zhao, Guifang Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae) |
title | Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae) |
title_full | Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae) |
title_fullStr | Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae) |
title_short | Characterization of the complete chloroplast genome sequence of Gynostemma microspermum (Cucurbitaceae) |
title_sort | characterization of the complete chloroplast genome sequence of gynostemma microspermum (cucurbitaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8667937/ https://www.ncbi.nlm.nih.gov/pubmed/34912963 http://dx.doi.org/10.1080/23802359.2021.2007811 |
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