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Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP

During translation, a conserved GTPase elongation factor—EF-G in bacteria or eEF2 in eukaryotes—translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that propels tRNA and mRNA movement, as a rigid pawl that biases unidirectional translocation resulting f...

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Autores principales: Carbone, Christine E., Loveland, Anna B., Gamper, Howard B., Hou, Ya-Ming, Demo, Gabriel, Korostelev, Andrei A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8668904/
https://www.ncbi.nlm.nih.gov/pubmed/34903725
http://dx.doi.org/10.1038/s41467-021-27415-0
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author Carbone, Christine E.
Loveland, Anna B.
Gamper, Howard B.
Hou, Ya-Ming
Demo, Gabriel
Korostelev, Andrei A.
author_facet Carbone, Christine E.
Loveland, Anna B.
Gamper, Howard B.
Hou, Ya-Ming
Demo, Gabriel
Korostelev, Andrei A.
author_sort Carbone, Christine E.
collection PubMed
description During translation, a conserved GTPase elongation factor—EF-G in bacteria or eEF2 in eukaryotes—translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that propels tRNA and mRNA movement, as a rigid pawl that biases unidirectional translocation resulting from ribosome rearrangements, or by various combinations of motor- and pawl-like mechanisms. Using time-resolved cryo-EM, we visualized GTP-catalyzed translocation without inhibitors, capturing elusive structures of ribosome•EF-G intermediates at near-atomic resolution. Prior to translocation, EF-G binds near peptidyl-tRNA, while the rotated 30S subunit stabilizes the EF-G GTPase center. Reverse 30S rotation releases Pi and translocates peptidyl-tRNA and EF-G by ~20 Å. An additional 4-Å translocation initiates EF-G dissociation from a transient ribosome state with highly swiveled 30S head. The structures visualize how nearly rigid EF-G rectifies inherent and spontaneous ribosomal dynamics into tRNA-mRNA translocation, whereas GTP hydrolysis and Pi release drive EF-G dissociation.
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spelling pubmed-86689042022-01-04 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP Carbone, Christine E. Loveland, Anna B. Gamper, Howard B. Hou, Ya-Ming Demo, Gabriel Korostelev, Andrei A. Nat Commun Article During translation, a conserved GTPase elongation factor—EF-G in bacteria or eEF2 in eukaryotes—translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that propels tRNA and mRNA movement, as a rigid pawl that biases unidirectional translocation resulting from ribosome rearrangements, or by various combinations of motor- and pawl-like mechanisms. Using time-resolved cryo-EM, we visualized GTP-catalyzed translocation without inhibitors, capturing elusive structures of ribosome•EF-G intermediates at near-atomic resolution. Prior to translocation, EF-G binds near peptidyl-tRNA, while the rotated 30S subunit stabilizes the EF-G GTPase center. Reverse 30S rotation releases Pi and translocates peptidyl-tRNA and EF-G by ~20 Å. An additional 4-Å translocation initiates EF-G dissociation from a transient ribosome state with highly swiveled 30S head. The structures visualize how nearly rigid EF-G rectifies inherent and spontaneous ribosomal dynamics into tRNA-mRNA translocation, whereas GTP hydrolysis and Pi release drive EF-G dissociation. Nature Publishing Group UK 2021-12-13 /pmc/articles/PMC8668904/ /pubmed/34903725 http://dx.doi.org/10.1038/s41467-021-27415-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Carbone, Christine E.
Loveland, Anna B.
Gamper, Howard B.
Hou, Ya-Ming
Demo, Gabriel
Korostelev, Andrei A.
Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
title Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
title_full Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
title_fullStr Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
title_full_unstemmed Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
title_short Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
title_sort time-resolved cryo-em visualizes ribosomal translocation with ef-g and gtp
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8668904/
https://www.ncbi.nlm.nih.gov/pubmed/34903725
http://dx.doi.org/10.1038/s41467-021-27415-0
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