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Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies
To develop a fully automatic model capable of reliably quantifying epicardial adipose tissue (EAT) volumes and attenuation in large scale population studies to investigate their relation to markers of cardiometabolic risk. Non-contrast cardiac CT images from the SCAPIS study were used to train and t...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8669008/ https://www.ncbi.nlm.nih.gov/pubmed/34903773 http://dx.doi.org/10.1038/s41598-021-03150-w |
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author | Molnar, David Enqvist, Olof Ulén, Johannes Larsson, Måns Brandberg, John Johnsson, Åse A. Björnson, Elias Bergström, Göran Hjelmgren, Ola |
author_facet | Molnar, David Enqvist, Olof Ulén, Johannes Larsson, Måns Brandberg, John Johnsson, Åse A. Björnson, Elias Bergström, Göran Hjelmgren, Ola |
author_sort | Molnar, David |
collection | PubMed |
description | To develop a fully automatic model capable of reliably quantifying epicardial adipose tissue (EAT) volumes and attenuation in large scale population studies to investigate their relation to markers of cardiometabolic risk. Non-contrast cardiac CT images from the SCAPIS study were used to train and test a convolutional neural network based model to quantify EAT by: segmenting the pericardium, suppressing noise-induced artifacts in the heart chambers, and, if image sets were incomplete, imputing missing EAT volumes. The model achieved a mean Dice coefficient of 0.90 when tested against expert manual segmentations on 25 image sets. Tested on 1400 image sets, the model successfully segmented 99.4% of the cases. Automatic imputation of missing EAT volumes had an error of less than 3.1% with up to 20% of the slices in image sets missing. The most important predictors of EAT volumes were weight and waist, while EAT attenuation was predicted mainly by EAT volume. A model with excellent performance, capable of fully automatic handling of the most common challenges in large scale EAT quantification has been developed. In studies of the importance of EAT in disease development, the strong co-variation with anthropometric measures needs to be carefully considered. |
format | Online Article Text |
id | pubmed-8669008 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-86690082021-12-15 Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies Molnar, David Enqvist, Olof Ulén, Johannes Larsson, Måns Brandberg, John Johnsson, Åse A. Björnson, Elias Bergström, Göran Hjelmgren, Ola Sci Rep Article To develop a fully automatic model capable of reliably quantifying epicardial adipose tissue (EAT) volumes and attenuation in large scale population studies to investigate their relation to markers of cardiometabolic risk. Non-contrast cardiac CT images from the SCAPIS study were used to train and test a convolutional neural network based model to quantify EAT by: segmenting the pericardium, suppressing noise-induced artifacts in the heart chambers, and, if image sets were incomplete, imputing missing EAT volumes. The model achieved a mean Dice coefficient of 0.90 when tested against expert manual segmentations on 25 image sets. Tested on 1400 image sets, the model successfully segmented 99.4% of the cases. Automatic imputation of missing EAT volumes had an error of less than 3.1% with up to 20% of the slices in image sets missing. The most important predictors of EAT volumes were weight and waist, while EAT attenuation was predicted mainly by EAT volume. A model with excellent performance, capable of fully automatic handling of the most common challenges in large scale EAT quantification has been developed. In studies of the importance of EAT in disease development, the strong co-variation with anthropometric measures needs to be carefully considered. Nature Publishing Group UK 2021-12-13 /pmc/articles/PMC8669008/ /pubmed/34903773 http://dx.doi.org/10.1038/s41598-021-03150-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Molnar, David Enqvist, Olof Ulén, Johannes Larsson, Måns Brandberg, John Johnsson, Åse A. Björnson, Elias Bergström, Göran Hjelmgren, Ola Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies |
title | Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies |
title_full | Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies |
title_fullStr | Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies |
title_full_unstemmed | Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies |
title_short | Artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies |
title_sort | artificial intelligence based automatic quantification of epicardial adipose tissue suitable for large scale population studies |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8669008/ https://www.ncbi.nlm.nih.gov/pubmed/34903773 http://dx.doi.org/10.1038/s41598-021-03150-w |
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