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Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer
Background: Non–small cell lung cancer (NSCLC) is among the major health problems around the world. Reliable biomarkers for NSCLC are still needed in clinical practice. We aimed to develop a novel ferroptosis- and immune-based index for NSCLC. Methods: The training and testing datasets were obtained...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8669617/ https://www.ncbi.nlm.nih.gov/pubmed/34917129 http://dx.doi.org/10.3389/fgene.2021.764869 |
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author | Teng, Yang Wang, Bo Shang, Desi Yang, Ning |
author_facet | Teng, Yang Wang, Bo Shang, Desi Yang, Ning |
author_sort | Teng, Yang |
collection | PubMed |
description | Background: Non–small cell lung cancer (NSCLC) is among the major health problems around the world. Reliable biomarkers for NSCLC are still needed in clinical practice. We aimed to develop a novel ferroptosis- and immune-based index for NSCLC. Methods: The training and testing datasets were obtained from TCGA and GEO databases, respectively. Immune- and ferroptosis-related genes were identified and used to establish a prognostic model. Then, the prognostic and therapeutic potential of the established index was evaluated. Results: Intimate interaction of immune genes with ferroptosis genes was observed. A total of 32 prognosis-related signatures were selected to develop a predictive model for NSCLC using LASSO Cox regression. Patients were classified into the high- and low-risk group based on the risk score. Patients in the low-risk group have better OS in contrast with that in the high-risk group in independent verification datasets. Besides, patients with a high risk score have shorter OS in all subgroups (T, N, and M0 subgroups) and pathological stages (stage I, II, and III). The risk score was positively associated with Immune Score, Stromal Score, and Ferroptosis Score in TCGA and GEO cohorts. A differential immune cell infiltration between the high-risk and the low-risk groups was also observed. Finally, we explored the significance of our model in tumor-related pathways, and different enrichment levels in the therapeutic pathway were observed between the high- and low-risk groups. Conclusion: The present study developed an immune and ferroptosis-combined index for the prognosis of NSCLC. |
format | Online Article Text |
id | pubmed-8669617 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86696172021-12-15 Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer Teng, Yang Wang, Bo Shang, Desi Yang, Ning Front Genet Genetics Background: Non–small cell lung cancer (NSCLC) is among the major health problems around the world. Reliable biomarkers for NSCLC are still needed in clinical practice. We aimed to develop a novel ferroptosis- and immune-based index for NSCLC. Methods: The training and testing datasets were obtained from TCGA and GEO databases, respectively. Immune- and ferroptosis-related genes were identified and used to establish a prognostic model. Then, the prognostic and therapeutic potential of the established index was evaluated. Results: Intimate interaction of immune genes with ferroptosis genes was observed. A total of 32 prognosis-related signatures were selected to develop a predictive model for NSCLC using LASSO Cox regression. Patients were classified into the high- and low-risk group based on the risk score. Patients in the low-risk group have better OS in contrast with that in the high-risk group in independent verification datasets. Besides, patients with a high risk score have shorter OS in all subgroups (T, N, and M0 subgroups) and pathological stages (stage I, II, and III). The risk score was positively associated with Immune Score, Stromal Score, and Ferroptosis Score in TCGA and GEO cohorts. A differential immune cell infiltration between the high-risk and the low-risk groups was also observed. Finally, we explored the significance of our model in tumor-related pathways, and different enrichment levels in the therapeutic pathway were observed between the high- and low-risk groups. Conclusion: The present study developed an immune and ferroptosis-combined index for the prognosis of NSCLC. Frontiers Media S.A. 2021-11-30 /pmc/articles/PMC8669617/ /pubmed/34917129 http://dx.doi.org/10.3389/fgene.2021.764869 Text en Copyright © 2021 Teng, Wang, Shang and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Teng, Yang Wang, Bo Shang, Desi Yang, Ning Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer |
title | Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer |
title_full | Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer |
title_fullStr | Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer |
title_full_unstemmed | Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer |
title_short | Identification and Validation of an Immune and Ferroptosis-Combined Index for Non–Small Cell Lung Cancer |
title_sort | identification and validation of an immune and ferroptosis-combined index for non–small cell lung cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8669617/ https://www.ncbi.nlm.nih.gov/pubmed/34917129 http://dx.doi.org/10.3389/fgene.2021.764869 |
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