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Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling
Herein, we propose a new deep neural network model based on invariant information clustering (IIC), proposed by Ji et al., to improve the modeling performance of the leave-one-site-out cross-validation (LOSO-CV) for a multi-source dataset. Our Extended IIC (EIIC) is a type of contrastive learning; h...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8671136/ https://www.ncbi.nlm.nih.gov/pubmed/34924987 http://dx.doi.org/10.3389/fninf.2021.709179 |
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author | Okamoto, Naoki Akama, Hiroyuki |
author_facet | Okamoto, Naoki Akama, Hiroyuki |
author_sort | Okamoto, Naoki |
collection | PubMed |
description | Herein, we propose a new deep neural network model based on invariant information clustering (IIC), proposed by Ji et al., to improve the modeling performance of the leave-one-site-out cross-validation (LOSO-CV) for a multi-source dataset. Our Extended IIC (EIIC) is a type of contrastive learning; however, unlike the original IIC, it is characterized by transfer learning with labeled data pairs, but without the need for a data augmentation technique. Each site in LOSO-CV is left out in turn from the remaining sites used for training and receives a value for modeling evaluation. We applied the EIIC to the resting state functional connectivity magnetic resonance imaging dataset of the Autism Brain Imaging Data Exchange. The challenging nature of brain analysis for autism spectrum disorder (ASD) can be attributed to the variability of subjects, particularly the rapid change in the neural system of children as the target ASD age group. However, EIIC demonstrated higher LOSO-CV classification accuracy for the majority of scanning locations than previously used methods. Particularly, with the adjustment of a mini-batch size, EIIC outperformed other classifiers with an accuracy >0.8 for the sites with highest mean age of the subjects. Considering its effectiveness, our proposed method might be promising for harmonization in other domains, owing to its simplicity and intrinsic flexibility. |
format | Online Article Text |
id | pubmed-8671136 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86711362021-12-16 Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling Okamoto, Naoki Akama, Hiroyuki Front Neuroinform Neuroinformatics Herein, we propose a new deep neural network model based on invariant information clustering (IIC), proposed by Ji et al., to improve the modeling performance of the leave-one-site-out cross-validation (LOSO-CV) for a multi-source dataset. Our Extended IIC (EIIC) is a type of contrastive learning; however, unlike the original IIC, it is characterized by transfer learning with labeled data pairs, but without the need for a data augmentation technique. Each site in LOSO-CV is left out in turn from the remaining sites used for training and receives a value for modeling evaluation. We applied the EIIC to the resting state functional connectivity magnetic resonance imaging dataset of the Autism Brain Imaging Data Exchange. The challenging nature of brain analysis for autism spectrum disorder (ASD) can be attributed to the variability of subjects, particularly the rapid change in the neural system of children as the target ASD age group. However, EIIC demonstrated higher LOSO-CV classification accuracy for the majority of scanning locations than previously used methods. Particularly, with the adjustment of a mini-batch size, EIIC outperformed other classifiers with an accuracy >0.8 for the sites with highest mean age of the subjects. Considering its effectiveness, our proposed method might be promising for harmonization in other domains, owing to its simplicity and intrinsic flexibility. Frontiers Media S.A. 2021-12-01 /pmc/articles/PMC8671136/ /pubmed/34924987 http://dx.doi.org/10.3389/fninf.2021.709179 Text en Copyright © 2021 Okamoto and Akama. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroinformatics Okamoto, Naoki Akama, Hiroyuki Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling |
title | Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling |
title_full | Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling |
title_fullStr | Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling |
title_full_unstemmed | Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling |
title_short | Extended Invariant Information Clustering Is Effective for Leave-One-Site-Out Cross-Validation in Resting State Functional Connectivity Modeling |
title_sort | extended invariant information clustering is effective for leave-one-site-out cross-validation in resting state functional connectivity modeling |
topic | Neuroinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8671136/ https://www.ncbi.nlm.nih.gov/pubmed/34924987 http://dx.doi.org/10.3389/fninf.2021.709179 |
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