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Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells

BACKGROUND: Digitisation of specimens (e.g. zoological, botanical) can provide access to advanced morphological and anatomical information and promote new research opportunities. The micro-CT technology may support the development of "virtual museums" or "virtual laboratories" wh...

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Autores principales: Chatzinikolaou, Eva, Keklikoglou, Kleoniki, Grigoriou, Panagiotis, Arvanitidis, Christos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8671708/
https://www.ncbi.nlm.nih.gov/pubmed/34916868
http://dx.doi.org/10.3897/BDJ.9.e75358
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author Chatzinikolaou, Eva
Keklikoglou, Kleoniki
Grigoriou, Panagiotis
Arvanitidis, Christos
author_facet Chatzinikolaou, Eva
Keklikoglou, Kleoniki
Grigoriou, Panagiotis
Arvanitidis, Christos
author_sort Chatzinikolaou, Eva
collection PubMed
description BACKGROUND: Digitisation of specimens (e.g. zoological, botanical) can provide access to advanced morphological and anatomical information and promote new research opportunities. The micro-CT technology may support the development of "virtual museums" or "virtual laboratories" where digital 3D imaging data are shared widely and freely. There is currently a lack of universal standards concerning the publication and curation of micro-CT datasets. NEW INFORMATION: The aim of the current project was to create a virtual gallery with micro-CT scans of individuals of the marine gastropod Hexaplextrunculus, which were maintained under a combination of increased temperature and low pH conditions, thus simulating future climate change scenarios. The 3D volume-rendering models created were used to visualise the structure properties of the gastropods shells. Finally, the 3D analysis performed on the micro-CT scans was used to investigate potential changes in the shell properties of the gastropods. The derived micro-CT 3D images were annotated with detailed metadata and can be interactively displayed and manipulated using online tools through the micro-CT virtual laboratory, which was developed under the LifeWatchGreece Research Infrastructure for the dissemination of virtual image galleries collection supporting the principles of FAIR data.
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spelling pubmed-86717082021-12-15 Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells Chatzinikolaou, Eva Keklikoglou, Kleoniki Grigoriou, Panagiotis Arvanitidis, Christos Biodivers Data J Data Paper (Biosciences) BACKGROUND: Digitisation of specimens (e.g. zoological, botanical) can provide access to advanced morphological and anatomical information and promote new research opportunities. The micro-CT technology may support the development of "virtual museums" or "virtual laboratories" where digital 3D imaging data are shared widely and freely. There is currently a lack of universal standards concerning the publication and curation of micro-CT datasets. NEW INFORMATION: The aim of the current project was to create a virtual gallery with micro-CT scans of individuals of the marine gastropod Hexaplextrunculus, which were maintained under a combination of increased temperature and low pH conditions, thus simulating future climate change scenarios. The 3D volume-rendering models created were used to visualise the structure properties of the gastropods shells. Finally, the 3D analysis performed on the micro-CT scans was used to investigate potential changes in the shell properties of the gastropods. The derived micro-CT 3D images were annotated with detailed metadata and can be interactively displayed and manipulated using online tools through the micro-CT virtual laboratory, which was developed under the LifeWatchGreece Research Infrastructure for the dissemination of virtual image galleries collection supporting the principles of FAIR data. Pensoft Publishers 2021-12-07 /pmc/articles/PMC8671708/ /pubmed/34916868 http://dx.doi.org/10.3897/BDJ.9.e75358 Text en Eva Chatzinikolaou, Kleoniki Keklikoglou, Panagiotis Grigoriou, Christos Arvanitidis https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Data Paper (Biosciences)
Chatzinikolaou, Eva
Keklikoglou, Kleoniki
Grigoriou, Panagiotis
Arvanitidis, Christos
Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells
title Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells
title_full Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells
title_fullStr Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells
title_full_unstemmed Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells
title_short Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells
title_sort micro-ct image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells
topic Data Paper (Biosciences)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8671708/
https://www.ncbi.nlm.nih.gov/pubmed/34916868
http://dx.doi.org/10.3897/BDJ.9.e75358
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