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Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma
Osteosarcoma is a malignant tumor that originates in the bones with the characteristics of high malignancy, predisposition to metastasis, and poor prognosis. RNA binding proteins (RBPs) are closely related to various tumors, but their relationship with osteosarcoma remains unclear. Based on GTEx and...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8671810/ https://www.ncbi.nlm.nih.gov/pubmed/34926575 http://dx.doi.org/10.3389/fmolb.2021.751842 |
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author | Zhang, Jian Miao, Xinxin Wu, Tianlong Jia, Jingyu Cheng, Xigao |
author_facet | Zhang, Jian Miao, Xinxin Wu, Tianlong Jia, Jingyu Cheng, Xigao |
author_sort | Zhang, Jian |
collection | PubMed |
description | Osteosarcoma is a malignant tumor that originates in the bones with the characteristics of high malignancy, predisposition to metastasis, and poor prognosis. RNA binding proteins (RBPs) are closely related to various tumors, but their relationship with osteosarcoma remains unclear. Based on GTEx and TARGET RNA sequencing data, we applied differential analysis to obtain RBP genes that are differentially expressed in osteosarcoma, and analyzed the functions of these RBPs. After applying univariate and LASSO Cox regression analysis, 10 key prognostic RBPs (TDRD6, TLR8, NXT2, EIF4E3, RPS27L, CPEB3, RBM34, TERT, RPS29, and ZC3HAV1) were screened, and an RBP prognostic risk assessment model for patients with osteosarcoma was established. The independent cohort GSE21257 was used for external verification, and the results showed that the signature has an excellent ability to predict prognosis. In addition, a nomogram that can be used for clinical evaluation was constructed. Finally, the expression levels of 10 prognostic RBPs in osteosarcoma cells and tissues were confirmed through experiments. Our study identified a ten-gene prognostic marker related to RBP, which is of great significance for adjusting the treatment strategy of patients with osteosarcoma and exploring prognostic markers. |
format | Online Article Text |
id | pubmed-8671810 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86718102021-12-16 Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma Zhang, Jian Miao, Xinxin Wu, Tianlong Jia, Jingyu Cheng, Xigao Front Mol Biosci Molecular Biosciences Osteosarcoma is a malignant tumor that originates in the bones with the characteristics of high malignancy, predisposition to metastasis, and poor prognosis. RNA binding proteins (RBPs) are closely related to various tumors, but their relationship with osteosarcoma remains unclear. Based on GTEx and TARGET RNA sequencing data, we applied differential analysis to obtain RBP genes that are differentially expressed in osteosarcoma, and analyzed the functions of these RBPs. After applying univariate and LASSO Cox regression analysis, 10 key prognostic RBPs (TDRD6, TLR8, NXT2, EIF4E3, RPS27L, CPEB3, RBM34, TERT, RPS29, and ZC3HAV1) were screened, and an RBP prognostic risk assessment model for patients with osteosarcoma was established. The independent cohort GSE21257 was used for external verification, and the results showed that the signature has an excellent ability to predict prognosis. In addition, a nomogram that can be used for clinical evaluation was constructed. Finally, the expression levels of 10 prognostic RBPs in osteosarcoma cells and tissues were confirmed through experiments. Our study identified a ten-gene prognostic marker related to RBP, which is of great significance for adjusting the treatment strategy of patients with osteosarcoma and exploring prognostic markers. Frontiers Media S.A. 2021-12-01 /pmc/articles/PMC8671810/ /pubmed/34926575 http://dx.doi.org/10.3389/fmolb.2021.751842 Text en Copyright © 2021 Zhang, Miao, Wu, Jia and Cheng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Zhang, Jian Miao, Xinxin Wu, Tianlong Jia, Jingyu Cheng, Xigao Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma |
title | Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma |
title_full | Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma |
title_fullStr | Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma |
title_full_unstemmed | Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma |
title_short | Development and Validation of Ten-RNA Binding Protein Signature Predicts Overall Survival in Osteosarcoma |
title_sort | development and validation of ten-rna binding protein signature predicts overall survival in osteosarcoma |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8671810/ https://www.ncbi.nlm.nih.gov/pubmed/34926575 http://dx.doi.org/10.3389/fmolb.2021.751842 |
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