Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen

Clostridium perfringens B20 was isolated from chicken feces collected from a local farm associated with Chung-Ang University (Anseong, Korea). The whole genome of C. perfringens B20 was sequenced using the PacBio RS II platform and assembled de novo. The genome is 2,982,563 bp long and assembled in...

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Autores principales: Elnar, Arxel G., Kim, Geun-Bae
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Animal Sciences and Technology 2021
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8672250/
https://www.ncbi.nlm.nih.gov/pubmed/34957460
http://dx.doi.org/10.5187/jast.2021.e113
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author Elnar, Arxel G.
Kim, Geun-Bae
author_facet Elnar, Arxel G.
Kim, Geun-Bae
author_sort Elnar, Arxel G.
collection PubMed
description Clostridium perfringens B20 was isolated from chicken feces collected from a local farm associated with Chung-Ang University (Anseong, Korea). The whole genome of C. perfringens B20 was sequenced using the PacBio RS II platform and assembled de novo. The genome is 2,982,563 bp long and assembled in two contigs. Annotation analyses revealed 2,668 protein-coding sequences, 30 rRNA genes, and 94 tRNA genes, with 28.2% G + C (guanine + cytosine) content. In silico genomic analysis revealed the presence of genes encoding a class IId bacteriocin, lactococcin A, and associated ABC transporter and immunity proteins, as well as a putative bacteriocin gene.
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spelling pubmed-86722502021-12-23 Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen Elnar, Arxel G. Kim, Geun-Bae J Anim Sci Technol Research Article Clostridium perfringens B20 was isolated from chicken feces collected from a local farm associated with Chung-Ang University (Anseong, Korea). The whole genome of C. perfringens B20 was sequenced using the PacBio RS II platform and assembled de novo. The genome is 2,982,563 bp long and assembled in two contigs. Annotation analyses revealed 2,668 protein-coding sequences, 30 rRNA genes, and 94 tRNA genes, with 28.2% G + C (guanine + cytosine) content. In silico genomic analysis revealed the presence of genes encoding a class IId bacteriocin, lactococcin A, and associated ABC transporter and immunity proteins, as well as a putative bacteriocin gene. Korean Society of Animal Sciences and Technology 2021-11 2021-11-30 /pmc/articles/PMC8672250/ /pubmed/34957460 http://dx.doi.org/10.5187/jast.2021.e113 Text en © Copyright 2021 Korean Society of Animal Science and Technology https://creativecommons.org/licenses/by-nc/4.0/This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Elnar, Arxel G.
Kim, Geun-Bae
Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen
title Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen
title_full Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen
title_fullStr Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen
title_full_unstemmed Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen
title_short Complete genome sequence of Clostridium perfringens B20, a bacteriocin-producing pathogen
title_sort complete genome sequence of clostridium perfringens b20, a bacteriocin-producing pathogen
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8672250/
https://www.ncbi.nlm.nih.gov/pubmed/34957460
http://dx.doi.org/10.5187/jast.2021.e113
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