Cargando…

A term-based and citation network-based search system for COVID-19

The COVID-19 pandemic resulted in an unprecedented production of scientific literature spanning several fields. To facilitate navigation of the scientific literature related to various aspects of the pandemic, we developed an exploratory search system. The system is based on automatically identified...

Descripción completa

Detalles Bibliográficos
Autores principales: Zerva, Chrysoula, Taylor, Samuel, Soto, Axel J, Nguyen, Nhung T H, Ananiadou, Sophia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8672931/
https://www.ncbi.nlm.nih.gov/pubmed/34927002
http://dx.doi.org/10.1093/jamiaopen/ooab104
_version_ 1784615442632933376
author Zerva, Chrysoula
Taylor, Samuel
Soto, Axel J
Nguyen, Nhung T H
Ananiadou, Sophia
author_facet Zerva, Chrysoula
Taylor, Samuel
Soto, Axel J
Nguyen, Nhung T H
Ananiadou, Sophia
author_sort Zerva, Chrysoula
collection PubMed
description The COVID-19 pandemic resulted in an unprecedented production of scientific literature spanning several fields. To facilitate navigation of the scientific literature related to various aspects of the pandemic, we developed an exploratory search system. The system is based on automatically identified technical terms, document citations, and their visualization, accelerating identification of relevant documents. It offers a multi-view interactive search and navigation interface, bringing together unsupervised approaches of term extraction and citation analysis. We conducted a user evaluation with domain experts, including epidemiologists, biochemists, medicinal chemists, and medicine students. In general, most users were satisfied with the relevance and speed of the search results. More interestingly, participants mostly agreed on the capacity of the system to enable exploration and discovery of the search space using the graph visualization and filters. The system is updated on a weekly basis and it is publicly available at http://www.nactem.ac.uk/cord/.
format Online
Article
Text
id pubmed-8672931
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-86729312021-12-16 A term-based and citation network-based search system for COVID-19 Zerva, Chrysoula Taylor, Samuel Soto, Axel J Nguyen, Nhung T H Ananiadou, Sophia JAMIA Open Application Notes The COVID-19 pandemic resulted in an unprecedented production of scientific literature spanning several fields. To facilitate navigation of the scientific literature related to various aspects of the pandemic, we developed an exploratory search system. The system is based on automatically identified technical terms, document citations, and their visualization, accelerating identification of relevant documents. It offers a multi-view interactive search and navigation interface, bringing together unsupervised approaches of term extraction and citation analysis. We conducted a user evaluation with domain experts, including epidemiologists, biochemists, medicinal chemists, and medicine students. In general, most users were satisfied with the relevance and speed of the search results. More interestingly, participants mostly agreed on the capacity of the system to enable exploration and discovery of the search space using the graph visualization and filters. The system is updated on a weekly basis and it is publicly available at http://www.nactem.ac.uk/cord/. Oxford University Press 2021-12-14 /pmc/articles/PMC8672931/ /pubmed/34927002 http://dx.doi.org/10.1093/jamiaopen/ooab104 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Notes
Zerva, Chrysoula
Taylor, Samuel
Soto, Axel J
Nguyen, Nhung T H
Ananiadou, Sophia
A term-based and citation network-based search system for COVID-19
title A term-based and citation network-based search system for COVID-19
title_full A term-based and citation network-based search system for COVID-19
title_fullStr A term-based and citation network-based search system for COVID-19
title_full_unstemmed A term-based and citation network-based search system for COVID-19
title_short A term-based and citation network-based search system for COVID-19
title_sort term-based and citation network-based search system for covid-19
topic Application Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8672931/
https://www.ncbi.nlm.nih.gov/pubmed/34927002
http://dx.doi.org/10.1093/jamiaopen/ooab104
work_keys_str_mv AT zervachrysoula atermbasedandcitationnetworkbasedsearchsystemforcovid19
AT taylorsamuel atermbasedandcitationnetworkbasedsearchsystemforcovid19
AT sotoaxelj atermbasedandcitationnetworkbasedsearchsystemforcovid19
AT nguyennhungth atermbasedandcitationnetworkbasedsearchsystemforcovid19
AT ananiadousophia atermbasedandcitationnetworkbasedsearchsystemforcovid19
AT zervachrysoula termbasedandcitationnetworkbasedsearchsystemforcovid19
AT taylorsamuel termbasedandcitationnetworkbasedsearchsystemforcovid19
AT sotoaxelj termbasedandcitationnetworkbasedsearchsystemforcovid19
AT nguyennhungth termbasedandcitationnetworkbasedsearchsystemforcovid19
AT ananiadousophia termbasedandcitationnetworkbasedsearchsystemforcovid19