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Bioinformatics analysis for the role of CALR in human cancers

Cancer is one of the most important public health problems in the world. The curative effect of traditional surgery, radiotherapy and chemotherapy is limited and has inevitable side effects. As a potential target for tumor therapy, few studies have comprehensively analyzed the role of CALR in cancer...

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Autores principales: Li, Yijun, Liu, Xiaoxu, Chen, Heyan, Xie, Peiling, Ma, Rulan, He, Jianjun, Zhang, Huimin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8673678/
https://www.ncbi.nlm.nih.gov/pubmed/34910788
http://dx.doi.org/10.1371/journal.pone.0261254
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author Li, Yijun
Liu, Xiaoxu
Chen, Heyan
Xie, Peiling
Ma, Rulan
He, Jianjun
Zhang, Huimin
author_facet Li, Yijun
Liu, Xiaoxu
Chen, Heyan
Xie, Peiling
Ma, Rulan
He, Jianjun
Zhang, Huimin
author_sort Li, Yijun
collection PubMed
description Cancer is one of the most important public health problems in the world. The curative effect of traditional surgery, radiotherapy and chemotherapy is limited and has inevitable side effects. As a potential target for tumor therapy, few studies have comprehensively analyzed the role of CALR in cancers. Therefore, by using GeneCards, UALCAN, GEPIA, Kaplan-Meier Plotter, COSMIC, Regulome Explorer, String, GeneMANIA and TIMER databases, we collected and analyzed relevant data to conduct in-depth bioinformatics research on the CALR expression in Pan-cancer to assess the possibility of CALR as a potential therapeutic target and survival biomarker. We studied the CALR expression in normal human tissues and various tumors of different stages, and found that CALR expression was associated with relapse free survival (RFS). We verified the expression of CALR in breast cancer cell lines by vitro experiments. Mutations of CALR were widely present in tumors. CALR interacted with different genes and various proteins. In tumors, a variety of immune cells are closely related to CALR. In conclusion, CALR can be used as a biomarker for predicting prognosis and a potential target for tumor molecular and immunotherapy.
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spelling pubmed-86736782021-12-16 Bioinformatics analysis for the role of CALR in human cancers Li, Yijun Liu, Xiaoxu Chen, Heyan Xie, Peiling Ma, Rulan He, Jianjun Zhang, Huimin PLoS One Research Article Cancer is one of the most important public health problems in the world. The curative effect of traditional surgery, radiotherapy and chemotherapy is limited and has inevitable side effects. As a potential target for tumor therapy, few studies have comprehensively analyzed the role of CALR in cancers. Therefore, by using GeneCards, UALCAN, GEPIA, Kaplan-Meier Plotter, COSMIC, Regulome Explorer, String, GeneMANIA and TIMER databases, we collected and analyzed relevant data to conduct in-depth bioinformatics research on the CALR expression in Pan-cancer to assess the possibility of CALR as a potential therapeutic target and survival biomarker. We studied the CALR expression in normal human tissues and various tumors of different stages, and found that CALR expression was associated with relapse free survival (RFS). We verified the expression of CALR in breast cancer cell lines by vitro experiments. Mutations of CALR were widely present in tumors. CALR interacted with different genes and various proteins. In tumors, a variety of immune cells are closely related to CALR. In conclusion, CALR can be used as a biomarker for predicting prognosis and a potential target for tumor molecular and immunotherapy. Public Library of Science 2021-12-15 /pmc/articles/PMC8673678/ /pubmed/34910788 http://dx.doi.org/10.1371/journal.pone.0261254 Text en © 2021 Li et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Li, Yijun
Liu, Xiaoxu
Chen, Heyan
Xie, Peiling
Ma, Rulan
He, Jianjun
Zhang, Huimin
Bioinformatics analysis for the role of CALR in human cancers
title Bioinformatics analysis for the role of CALR in human cancers
title_full Bioinformatics analysis for the role of CALR in human cancers
title_fullStr Bioinformatics analysis for the role of CALR in human cancers
title_full_unstemmed Bioinformatics analysis for the role of CALR in human cancers
title_short Bioinformatics analysis for the role of CALR in human cancers
title_sort bioinformatics analysis for the role of calr in human cancers
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8673678/
https://www.ncbi.nlm.nih.gov/pubmed/34910788
http://dx.doi.org/10.1371/journal.pone.0261254
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