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MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features

COVID-19 is a respiratory disease that causes infection in both lungs and the upper respiratory tract. The World Health Organization (WHO) has declared it a global pandemic because of its rapid spread across the globe. The most common way for COVID-19 diagnosis is real-time reverse transcription-pol...

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Autores principales: Dey, Arijit, Chattopadhyay, Soham, Singh, Pawan Kumar, Ahmadian, Ali, Ferrara, Massimiliano, Senu, Norazak, Sarkar, Ram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8674247/
https://www.ncbi.nlm.nih.gov/pubmed/34911977
http://dx.doi.org/10.1038/s41598-021-02731-z
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author Dey, Arijit
Chattopadhyay, Soham
Singh, Pawan Kumar
Ahmadian, Ali
Ferrara, Massimiliano
Senu, Norazak
Sarkar, Ram
author_facet Dey, Arijit
Chattopadhyay, Soham
Singh, Pawan Kumar
Ahmadian, Ali
Ferrara, Massimiliano
Senu, Norazak
Sarkar, Ram
author_sort Dey, Arijit
collection PubMed
description COVID-19 is a respiratory disease that causes infection in both lungs and the upper respiratory tract. The World Health Organization (WHO) has declared it a global pandemic because of its rapid spread across the globe. The most common way for COVID-19 diagnosis is real-time reverse transcription-polymerase chain reaction (RT-PCR) which takes a significant amount of time to get the result. Computer based medical image analysis is more beneficial for the diagnosis of such disease as it can give better results in less time. Computed Tomography (CT) scans are used to monitor lung diseases including COVID-19. In this work, a hybrid model for COVID-19 detection has developed which has two key stages. In the first stage, we have fine-tuned the parameters of the pre-trained convolutional neural networks (CNNs) to extract some features from the COVID-19 affected lungs. As pre-trained CNNs, we have used two standard CNNs namely, GoogleNet and ResNet18. Then, we have proposed a hybrid meta-heuristic feature selection (FS) algorithm, named as Manta Ray Foraging based Golden Ratio Optimizer (MRFGRO) to select the most significant feature subset. The proposed model is implemented over three publicly available datasets, namely, COVID-CT dataset, SARS-COV-2 dataset, and MOSMED dataset, and attains state-of-the-art classification accuracies of 99.15%, 99.42% and 95.57% respectively. Obtained results confirm that the proposed approach is quite efficient when compared to the local texture descriptors used for COVID-19 detection from chest CT-scan images.
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spelling pubmed-86742472021-12-16 MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features Dey, Arijit Chattopadhyay, Soham Singh, Pawan Kumar Ahmadian, Ali Ferrara, Massimiliano Senu, Norazak Sarkar, Ram Sci Rep Article COVID-19 is a respiratory disease that causes infection in both lungs and the upper respiratory tract. The World Health Organization (WHO) has declared it a global pandemic because of its rapid spread across the globe. The most common way for COVID-19 diagnosis is real-time reverse transcription-polymerase chain reaction (RT-PCR) which takes a significant amount of time to get the result. Computer based medical image analysis is more beneficial for the diagnosis of such disease as it can give better results in less time. Computed Tomography (CT) scans are used to monitor lung diseases including COVID-19. In this work, a hybrid model for COVID-19 detection has developed which has two key stages. In the first stage, we have fine-tuned the parameters of the pre-trained convolutional neural networks (CNNs) to extract some features from the COVID-19 affected lungs. As pre-trained CNNs, we have used two standard CNNs namely, GoogleNet and ResNet18. Then, we have proposed a hybrid meta-heuristic feature selection (FS) algorithm, named as Manta Ray Foraging based Golden Ratio Optimizer (MRFGRO) to select the most significant feature subset. The proposed model is implemented over three publicly available datasets, namely, COVID-CT dataset, SARS-COV-2 dataset, and MOSMED dataset, and attains state-of-the-art classification accuracies of 99.15%, 99.42% and 95.57% respectively. Obtained results confirm that the proposed approach is quite efficient when compared to the local texture descriptors used for COVID-19 detection from chest CT-scan images. Nature Publishing Group UK 2021-12-15 /pmc/articles/PMC8674247/ /pubmed/34911977 http://dx.doi.org/10.1038/s41598-021-02731-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dey, Arijit
Chattopadhyay, Soham
Singh, Pawan Kumar
Ahmadian, Ali
Ferrara, Massimiliano
Senu, Norazak
Sarkar, Ram
MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features
title MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features
title_full MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features
title_fullStr MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features
title_full_unstemmed MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features
title_short MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep features
title_sort mrfgro: a hybrid meta-heuristic feature selection method for screening covid-19 using deep features
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8674247/
https://www.ncbi.nlm.nih.gov/pubmed/34911977
http://dx.doi.org/10.1038/s41598-021-02731-z
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