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i-RheoFT: Fourier transforming sampled functions without artefacts
In this article we present a new open-access code named “i-RheoFT” that implements the analytical method first introduced in [PRE, 80, 012501 (2009)] and then enhanced in [New J Phys 14, 115032 (2012)], which allows to evaluate the Fourier transform of any generic time-dependent function that vanish...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8674267/ https://www.ncbi.nlm.nih.gov/pubmed/34911955 http://dx.doi.org/10.1038/s41598-021-02922-8 |
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author | Smith, Matthew G. Gibson, Graham M. Tassieri, Manlio |
author_facet | Smith, Matthew G. Gibson, Graham M. Tassieri, Manlio |
author_sort | Smith, Matthew G. |
collection | PubMed |
description | In this article we present a new open-access code named “i-RheoFT” that implements the analytical method first introduced in [PRE, 80, 012501 (2009)] and then enhanced in [New J Phys 14, 115032 (2012)], which allows to evaluate the Fourier transform of any generic time-dependent function that vanishes for negative times, sampled at a finite set of data points that extend over a finite range, and need not be equally spaced. I-RheoFT has been employed here to investigate three important experimental factors: (i) the ‘density of initial experimental points’ describing the sampled function, (ii) the interpolation function used to perform the “virtual oversampling” procedure introduced in [New J Phys 14, 115032 (2012)], and (iii) the detrimental effect of noises on the expected outcomes. We demonstrate that, at relatively high signal-to-noise ratios and density of initial experimental points, all three built-in MATLAB interpolation functions employed in this work (i.e., Spline, Makima and PCHIP) perform well in recovering the information embedded within the original sampled function; with the Spline function performing best. Whereas, by reducing either the number of initial data points or the signal-to-noise ratio, there exists a threshold below which all three functions perform poorly; with the worst performance given by the Spline function in both the cases and the least worst by the PCHIP function at low density of initial data points and by the Makima function at relatively low signal-to-noise ratios. We envisage that i-RheoFT will be of particular interest and use to all those studies where sampled or time-averaged functions, often defined by a discrete set of data points within a finite time-window, are exploited to gain new insights on the systems’ dynamics. |
format | Online Article Text |
id | pubmed-8674267 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-86742672021-12-16 i-RheoFT: Fourier transforming sampled functions without artefacts Smith, Matthew G. Gibson, Graham M. Tassieri, Manlio Sci Rep Article In this article we present a new open-access code named “i-RheoFT” that implements the analytical method first introduced in [PRE, 80, 012501 (2009)] and then enhanced in [New J Phys 14, 115032 (2012)], which allows to evaluate the Fourier transform of any generic time-dependent function that vanishes for negative times, sampled at a finite set of data points that extend over a finite range, and need not be equally spaced. I-RheoFT has been employed here to investigate three important experimental factors: (i) the ‘density of initial experimental points’ describing the sampled function, (ii) the interpolation function used to perform the “virtual oversampling” procedure introduced in [New J Phys 14, 115032 (2012)], and (iii) the detrimental effect of noises on the expected outcomes. We demonstrate that, at relatively high signal-to-noise ratios and density of initial experimental points, all three built-in MATLAB interpolation functions employed in this work (i.e., Spline, Makima and PCHIP) perform well in recovering the information embedded within the original sampled function; with the Spline function performing best. Whereas, by reducing either the number of initial data points or the signal-to-noise ratio, there exists a threshold below which all three functions perform poorly; with the worst performance given by the Spline function in both the cases and the least worst by the PCHIP function at low density of initial data points and by the Makima function at relatively low signal-to-noise ratios. We envisage that i-RheoFT will be of particular interest and use to all those studies where sampled or time-averaged functions, often defined by a discrete set of data points within a finite time-window, are exploited to gain new insights on the systems’ dynamics. Nature Publishing Group UK 2021-12-15 /pmc/articles/PMC8674267/ /pubmed/34911955 http://dx.doi.org/10.1038/s41598-021-02922-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Smith, Matthew G. Gibson, Graham M. Tassieri, Manlio i-RheoFT: Fourier transforming sampled functions without artefacts |
title | i-RheoFT: Fourier transforming sampled functions without artefacts |
title_full | i-RheoFT: Fourier transforming sampled functions without artefacts |
title_fullStr | i-RheoFT: Fourier transforming sampled functions without artefacts |
title_full_unstemmed | i-RheoFT: Fourier transforming sampled functions without artefacts |
title_short | i-RheoFT: Fourier transforming sampled functions without artefacts |
title_sort | i-rheoft: fourier transforming sampled functions without artefacts |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8674267/ https://www.ncbi.nlm.nih.gov/pubmed/34911955 http://dx.doi.org/10.1038/s41598-021-02922-8 |
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