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Deep Learning for Reconstructing Low-Quality FTIR and Raman Spectra—A Case Study in Microplastic Analyses
[Image: see text] Herein we report on a deep-learning method for the removal of instrumental noise and unwanted spectral artifacts in Fourier transform infrared (FTIR) or Raman spectra, especially in automated applications in which a large number of spectra have to be acquired within limited time. A...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8674871/ https://www.ncbi.nlm.nih.gov/pubmed/34807556 http://dx.doi.org/10.1021/acs.analchem.1c02618 |
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author | Brandt, Josef Mattsson, Karin Hassellöv, Martin |
author_facet | Brandt, Josef Mattsson, Karin Hassellöv, Martin |
author_sort | Brandt, Josef |
collection | PubMed |
description | [Image: see text] Herein we report on a deep-learning method for the removal of instrumental noise and unwanted spectral artifacts in Fourier transform infrared (FTIR) or Raman spectra, especially in automated applications in which a large number of spectra have to be acquired within limited time. Automated batch workflows allowing only a few seconds per measurement, without the possibility of manually optimizing measurement parameters, often result in challenging and heterogeneous datasets. A prominent example of this problem is the automated spectroscopic measurement of particles in environmental samples regarding their content of microplastic (MP) particles. Effective spectral identification is hampered by low signal-to-noise ratios and baseline artifacts as, again, spectral post-processing and analysis must be performed in automated measurements, without adjusting specific parameters for each spectrum. We demonstrate the application of a simple autoencoding neural net for reconstruction of complex spectral distortions, such as high levels of noise, baseline bending, interferences, or distorted bands. Once trained on appropriate data, the network is able to remove all unwanted artifacts in a single pass without the need for tuning spectra-specific parameters and with high computational efficiency. Thus, it offers great potential for monitoring applications with a large number of spectra and limited analysis time with availability of representative data from already completed experiments. |
format | Online Article Text |
id | pubmed-8674871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-86748712021-12-17 Deep Learning for Reconstructing Low-Quality FTIR and Raman Spectra—A Case Study in Microplastic Analyses Brandt, Josef Mattsson, Karin Hassellöv, Martin Anal Chem [Image: see text] Herein we report on a deep-learning method for the removal of instrumental noise and unwanted spectral artifacts in Fourier transform infrared (FTIR) or Raman spectra, especially in automated applications in which a large number of spectra have to be acquired within limited time. Automated batch workflows allowing only a few seconds per measurement, without the possibility of manually optimizing measurement parameters, often result in challenging and heterogeneous datasets. A prominent example of this problem is the automated spectroscopic measurement of particles in environmental samples regarding their content of microplastic (MP) particles. Effective spectral identification is hampered by low signal-to-noise ratios and baseline artifacts as, again, spectral post-processing and analysis must be performed in automated measurements, without adjusting specific parameters for each spectrum. We demonstrate the application of a simple autoencoding neural net for reconstruction of complex spectral distortions, such as high levels of noise, baseline bending, interferences, or distorted bands. Once trained on appropriate data, the network is able to remove all unwanted artifacts in a single pass without the need for tuning spectra-specific parameters and with high computational efficiency. Thus, it offers great potential for monitoring applications with a large number of spectra and limited analysis time with availability of representative data from already completed experiments. American Chemical Society 2021-11-22 2021-12-14 /pmc/articles/PMC8674871/ /pubmed/34807556 http://dx.doi.org/10.1021/acs.analchem.1c02618 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Brandt, Josef Mattsson, Karin Hassellöv, Martin Deep Learning for Reconstructing Low-Quality FTIR and Raman Spectra—A Case Study in Microplastic Analyses |
title | Deep Learning for Reconstructing Low-Quality FTIR
and Raman Spectra—A Case Study in Microplastic Analyses |
title_full | Deep Learning for Reconstructing Low-Quality FTIR
and Raman Spectra—A Case Study in Microplastic Analyses |
title_fullStr | Deep Learning for Reconstructing Low-Quality FTIR
and Raman Spectra—A Case Study in Microplastic Analyses |
title_full_unstemmed | Deep Learning for Reconstructing Low-Quality FTIR
and Raman Spectra—A Case Study in Microplastic Analyses |
title_short | Deep Learning for Reconstructing Low-Quality FTIR
and Raman Spectra—A Case Study in Microplastic Analyses |
title_sort | deep learning for reconstructing low-quality ftir
and raman spectra—a case study in microplastic analyses |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8674871/ https://www.ncbi.nlm.nih.gov/pubmed/34807556 http://dx.doi.org/10.1021/acs.analchem.1c02618 |
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