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Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network
The bistable Rb‐E2F gene regulatory network plays a central role in regulating cellular proliferation‐quiescence transition. Based on Gillespie's chemical Langevin method, the stochastic bistable Rb‐E2F gene’s regulatory network with time delays is proposed. It is found that under the moderate...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8675803/ https://www.ncbi.nlm.nih.gov/pubmed/33881232 http://dx.doi.org/10.1049/syb2.12017 |
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author | Kirunda, John Billy Yang, Lijian Lu, Lulu Jia, Ya |
author_facet | Kirunda, John Billy Yang, Lijian Lu, Lulu Jia, Ya |
author_sort | Kirunda, John Billy |
collection | PubMed |
description | The bistable Rb‐E2F gene regulatory network plays a central role in regulating cellular proliferation‐quiescence transition. Based on Gillespie's chemical Langevin method, the stochastic bistable Rb‐E2F gene’s regulatory network with time delays is proposed. It is found that under the moderate intensity of internal noise, delay in the Cyclin E synthesis rate can greatly increase the average concentration value of E2F. When the delay is considered in both E2F‐related positive feedback loops, within a specific range of delay (3‐13) [Formula: see text] , the average expression of E2F is significantly increased. Also, this range is in the scope with that experimentally given by Dong et al. [65]. By analysing the quasi‐potential curves at different delay times, simulation results show that delay regulates the dynamic behaviour of the system in the following way: small delay stabilises the bistable system; the medium delay is conducive to a high steady‐state, making the system fluctuate near the high steady‐state; large delay induces approximately periodic transitions between high and low steady‐state. Therefore, by regulating noise and time delay, the cell itself can control the expression level of E2F to respond to different situations. These findings may provide an explanation of some experimental result intricacies related to the cell cycle. |
format | Online Article Text |
id | pubmed-8675803 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86758032022-02-16 Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network Kirunda, John Billy Yang, Lijian Lu, Lulu Jia, Ya IET Syst Biol Original Research Papers The bistable Rb‐E2F gene regulatory network plays a central role in regulating cellular proliferation‐quiescence transition. Based on Gillespie's chemical Langevin method, the stochastic bistable Rb‐E2F gene’s regulatory network with time delays is proposed. It is found that under the moderate intensity of internal noise, delay in the Cyclin E synthesis rate can greatly increase the average concentration value of E2F. When the delay is considered in both E2F‐related positive feedback loops, within a specific range of delay (3‐13) [Formula: see text] , the average expression of E2F is significantly increased. Also, this range is in the scope with that experimentally given by Dong et al. [65]. By analysing the quasi‐potential curves at different delay times, simulation results show that delay regulates the dynamic behaviour of the system in the following way: small delay stabilises the bistable system; the medium delay is conducive to a high steady‐state, making the system fluctuate near the high steady‐state; large delay induces approximately periodic transitions between high and low steady‐state. Therefore, by regulating noise and time delay, the cell itself can control the expression level of E2F to respond to different situations. These findings may provide an explanation of some experimental result intricacies related to the cell cycle. John Wiley and Sons Inc. 2021-04-21 /pmc/articles/PMC8675803/ /pubmed/33881232 http://dx.doi.org/10.1049/syb2.12017 Text en © 2021 The Authors. IET Systems Biology published by John Wiley & Sons Ltd on behalf of The Institution of Engineering and Technology. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Research Papers Kirunda, John Billy Yang, Lijian Lu, Lulu Jia, Ya Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network |
title | Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network |
title_full | Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network |
title_fullStr | Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network |
title_full_unstemmed | Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network |
title_short | Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network |
title_sort | effects of noise and time delay on e2f's expression level in a bistable rb‐e2f gene’s regulatory network |
topic | Original Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8675803/ https://www.ncbi.nlm.nih.gov/pubmed/33881232 http://dx.doi.org/10.1049/syb2.12017 |
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