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Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network

The bistable Rb‐E2F gene regulatory network plays a central role in regulating cellular proliferation‐quiescence transition. Based on Gillespie's chemical Langevin method, the stochastic bistable Rb‐E2F gene’s regulatory network with time delays is proposed. It is found that under the moderate...

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Autores principales: Kirunda, John Billy, Yang, Lijian, Lu, Lulu, Jia, Ya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8675803/
https://www.ncbi.nlm.nih.gov/pubmed/33881232
http://dx.doi.org/10.1049/syb2.12017
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author Kirunda, John Billy
Yang, Lijian
Lu, Lulu
Jia, Ya
author_facet Kirunda, John Billy
Yang, Lijian
Lu, Lulu
Jia, Ya
author_sort Kirunda, John Billy
collection PubMed
description The bistable Rb‐E2F gene regulatory network plays a central role in regulating cellular proliferation‐quiescence transition. Based on Gillespie's chemical Langevin method, the stochastic bistable Rb‐E2F gene’s regulatory network with time delays is proposed. It is found that under the moderate intensity of internal noise, delay in the Cyclin E synthesis rate can greatly increase the average concentration value of E2F. When the delay is considered in both E2F‐related positive feedback loops, within a specific range of delay (3‐13) [Formula: see text] , the average expression of E2F is significantly increased. Also, this range is in the scope with that experimentally given by Dong et al. [65]. By analysing the quasi‐potential curves at different delay times, simulation results show that delay regulates the dynamic behaviour of the system in the following way: small delay stabilises the bistable system; the medium delay is conducive to a high steady‐state, making the system fluctuate near the high steady‐state; large delay induces approximately periodic transitions between high and low steady‐state. Therefore, by regulating noise and time delay, the cell itself can control the expression level of E2F to respond to different situations. These findings may provide an explanation of some experimental result intricacies related to the cell cycle.
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spelling pubmed-86758032022-02-16 Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network Kirunda, John Billy Yang, Lijian Lu, Lulu Jia, Ya IET Syst Biol Original Research Papers The bistable Rb‐E2F gene regulatory network plays a central role in regulating cellular proliferation‐quiescence transition. Based on Gillespie's chemical Langevin method, the stochastic bistable Rb‐E2F gene’s regulatory network with time delays is proposed. It is found that under the moderate intensity of internal noise, delay in the Cyclin E synthesis rate can greatly increase the average concentration value of E2F. When the delay is considered in both E2F‐related positive feedback loops, within a specific range of delay (3‐13) [Formula: see text] , the average expression of E2F is significantly increased. Also, this range is in the scope with that experimentally given by Dong et al. [65]. By analysing the quasi‐potential curves at different delay times, simulation results show that delay regulates the dynamic behaviour of the system in the following way: small delay stabilises the bistable system; the medium delay is conducive to a high steady‐state, making the system fluctuate near the high steady‐state; large delay induces approximately periodic transitions between high and low steady‐state. Therefore, by regulating noise and time delay, the cell itself can control the expression level of E2F to respond to different situations. These findings may provide an explanation of some experimental result intricacies related to the cell cycle. John Wiley and Sons Inc. 2021-04-21 /pmc/articles/PMC8675803/ /pubmed/33881232 http://dx.doi.org/10.1049/syb2.12017 Text en © 2021 The Authors. IET Systems Biology published by John Wiley & Sons Ltd on behalf of The Institution of Engineering and Technology. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Research Papers
Kirunda, John Billy
Yang, Lijian
Lu, Lulu
Jia, Ya
Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network
title Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network
title_full Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network
title_fullStr Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network
title_full_unstemmed Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network
title_short Effects of noise and time delay on E2F's expression level in a bistable Rb‐E2F gene’s regulatory network
title_sort effects of noise and time delay on e2f's expression level in a bistable rb‐e2f gene’s regulatory network
topic Original Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8675803/
https://www.ncbi.nlm.nih.gov/pubmed/33881232
http://dx.doi.org/10.1049/syb2.12017
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