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A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography

Independent Component Analysis (ICA) is a conventional approach to exclude non-brain signals such as eye movements and muscle artifacts from electroencephalography (EEG). A rejection of independent components (ICs) is usually performed in semiautomatic mode and requires experts’ involvement. As also...

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Autores principales: Soghoyan, Gurgen, Ledovsky, Alexander, Nekrashevich, Maxim, Martynova, Olga, Polikanova, Irina, Portnova, Galina, Rebreikina, Anna, Sysoeva, Olga, Sharaev, Maxim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8675888/
https://www.ncbi.nlm.nih.gov/pubmed/34924988
http://dx.doi.org/10.3389/fninf.2021.720229
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author Soghoyan, Gurgen
Ledovsky, Alexander
Nekrashevich, Maxim
Martynova, Olga
Polikanova, Irina
Portnova, Galina
Rebreikina, Anna
Sysoeva, Olga
Sharaev, Maxim
author_facet Soghoyan, Gurgen
Ledovsky, Alexander
Nekrashevich, Maxim
Martynova, Olga
Polikanova, Irina
Portnova, Galina
Rebreikina, Anna
Sysoeva, Olga
Sharaev, Maxim
author_sort Soghoyan, Gurgen
collection PubMed
description Independent Component Analysis (ICA) is a conventional approach to exclude non-brain signals such as eye movements and muscle artifacts from electroencephalography (EEG). A rejection of independent components (ICs) is usually performed in semiautomatic mode and requires experts’ involvement. As also revealed by our study, experts’ opinions about the nature of a component often disagree, highlighting the need to develop a robust and sustainable automatic system for EEG ICs classification. The current article presents a toolbox and crowdsourcing platform for Automatic Labeling of Independent Components in Electroencephalography (ALICE) available via link http://alice.adase.org/. The ALICE toolbox aims to build a sustainable algorithm to remove artifacts and find specific patterns in EEG signals using ICA decomposition based on accumulated experts’ knowledge. The difference from previous toolboxes is that the ALICE project will accumulate different benchmarks based on crowdsourced visual labeling of ICs collected from publicly available and in-house EEG recordings. The choice of labeling is based on the estimation of IC time-series, IC amplitude topography, and spectral power distribution. The platform allows supervised machine learning (ML) model training and re-training on available data subsamples for better performance in specific tasks (i.e., movement artifact detection in healthy or autistic children). Also, current research implements the novel strategy for consentient labeling of ICs by several experts. The provided baseline model could detect noisy IC and components related to the functional brain oscillations such as alpha and mu rhythm. The ALICE project implies the creation and constant replenishment of the IC database, which will improve ML algorithms for automatic labeling and extraction of non-brain signals from EEG. The toolbox and current dataset are open-source and freely available to the researcher community.
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spelling pubmed-86758882021-12-17 A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography Soghoyan, Gurgen Ledovsky, Alexander Nekrashevich, Maxim Martynova, Olga Polikanova, Irina Portnova, Galina Rebreikina, Anna Sysoeva, Olga Sharaev, Maxim Front Neuroinform Neuroscience Independent Component Analysis (ICA) is a conventional approach to exclude non-brain signals such as eye movements and muscle artifacts from electroencephalography (EEG). A rejection of independent components (ICs) is usually performed in semiautomatic mode and requires experts’ involvement. As also revealed by our study, experts’ opinions about the nature of a component often disagree, highlighting the need to develop a robust and sustainable automatic system for EEG ICs classification. The current article presents a toolbox and crowdsourcing platform for Automatic Labeling of Independent Components in Electroencephalography (ALICE) available via link http://alice.adase.org/. The ALICE toolbox aims to build a sustainable algorithm to remove artifacts and find specific patterns in EEG signals using ICA decomposition based on accumulated experts’ knowledge. The difference from previous toolboxes is that the ALICE project will accumulate different benchmarks based on crowdsourced visual labeling of ICs collected from publicly available and in-house EEG recordings. The choice of labeling is based on the estimation of IC time-series, IC amplitude topography, and spectral power distribution. The platform allows supervised machine learning (ML) model training and re-training on available data subsamples for better performance in specific tasks (i.e., movement artifact detection in healthy or autistic children). Also, current research implements the novel strategy for consentient labeling of ICs by several experts. The provided baseline model could detect noisy IC and components related to the functional brain oscillations such as alpha and mu rhythm. The ALICE project implies the creation and constant replenishment of the IC database, which will improve ML algorithms for automatic labeling and extraction of non-brain signals from EEG. The toolbox and current dataset are open-source and freely available to the researcher community. Frontiers Media S.A. 2021-12-02 /pmc/articles/PMC8675888/ /pubmed/34924988 http://dx.doi.org/10.3389/fninf.2021.720229 Text en Copyright © 2021 Soghoyan, Ledovsky, Nekrashevich, Martynova, Polikanova, Portnova, Rebreikina, Sysoeva and Sharaev. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Soghoyan, Gurgen
Ledovsky, Alexander
Nekrashevich, Maxim
Martynova, Olga
Polikanova, Irina
Portnova, Galina
Rebreikina, Anna
Sysoeva, Olga
Sharaev, Maxim
A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography
title A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography
title_full A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography
title_fullStr A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography
title_full_unstemmed A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography
title_short A Toolbox and Crowdsourcing Platform for Automatic Labeling of Independent Components in Electroencephalography
title_sort toolbox and crowdsourcing platform for automatic labeling of independent components in electroencephalography
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8675888/
https://www.ncbi.nlm.nih.gov/pubmed/34924988
http://dx.doi.org/10.3389/fninf.2021.720229
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