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Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood
Objective: Sciatica pertains to neuropathic pain that has been associated with inflammatory response. We aimed to identify significant immune-related biomarkers for sciatica in peripheral blood. Methods: We utilized the GSE150408 expression profiling data from the Gene Expression Omnibus (GEO) datab...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677837/ https://www.ncbi.nlm.nih.gov/pubmed/34925462 http://dx.doi.org/10.3389/fgene.2021.781945 |
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author | Jin, Xin Wang, Jun Ge, Lina Hu, Qing |
author_facet | Jin, Xin Wang, Jun Ge, Lina Hu, Qing |
author_sort | Jin, Xin |
collection | PubMed |
description | Objective: Sciatica pertains to neuropathic pain that has been associated with inflammatory response. We aimed to identify significant immune-related biomarkers for sciatica in peripheral blood. Methods: We utilized the GSE150408 expression profiling data from the Gene Expression Omnibus (GEO) database as the training dataset and extracted immune-related genes for further analysis. Differentially expressed immune-related genes (DEIRGs) between healthy controls and patients with sciatica were selected using the “limma” package and verified in clinical specimens by quantitative reverse transcription PCR (RT-qPCR). A diagnostic immune-related gene signature was established using the training model and random forest (RF), generalized linear model (GLM), and support vector machine (SVM) models. Sciatica patient subtypes were identified using the consensus clustering method. Results: Thirteen significant DEIRGs were acquired, of which five (CRP, EREG, FAM19A4, RLN1, and WFIKKN1) were selected to establish a diagnostic immune-related gene signature according to the most appropriate training model, namely, the RF model. A clinical application nomogram model was established based on the expression level of the five DEIRGs. The sciatica patients were divided into two subtypes (C1 and C2) according to the consensus clustering method. Conclusions: Our research established a diagnostic five immune-related gene signature to discriminate sciatica and identified two sciatica subtypes, which may be beneficial to the clinical diagnosis and treatment of sciatica. |
format | Online Article Text |
id | pubmed-8677837 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86778372021-12-18 Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood Jin, Xin Wang, Jun Ge, Lina Hu, Qing Front Genet Genetics Objective: Sciatica pertains to neuropathic pain that has been associated with inflammatory response. We aimed to identify significant immune-related biomarkers for sciatica in peripheral blood. Methods: We utilized the GSE150408 expression profiling data from the Gene Expression Omnibus (GEO) database as the training dataset and extracted immune-related genes for further analysis. Differentially expressed immune-related genes (DEIRGs) between healthy controls and patients with sciatica were selected using the “limma” package and verified in clinical specimens by quantitative reverse transcription PCR (RT-qPCR). A diagnostic immune-related gene signature was established using the training model and random forest (RF), generalized linear model (GLM), and support vector machine (SVM) models. Sciatica patient subtypes were identified using the consensus clustering method. Results: Thirteen significant DEIRGs were acquired, of which five (CRP, EREG, FAM19A4, RLN1, and WFIKKN1) were selected to establish a diagnostic immune-related gene signature according to the most appropriate training model, namely, the RF model. A clinical application nomogram model was established based on the expression level of the five DEIRGs. The sciatica patients were divided into two subtypes (C1 and C2) according to the consensus clustering method. Conclusions: Our research established a diagnostic five immune-related gene signature to discriminate sciatica and identified two sciatica subtypes, which may be beneficial to the clinical diagnosis and treatment of sciatica. Frontiers Media S.A. 2021-12-02 /pmc/articles/PMC8677837/ /pubmed/34925462 http://dx.doi.org/10.3389/fgene.2021.781945 Text en Copyright © 2021 Jin, Wang, Ge and Hu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Jin, Xin Wang, Jun Ge, Lina Hu, Qing Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood |
title | Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood |
title_full | Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood |
title_fullStr | Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood |
title_full_unstemmed | Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood |
title_short | Identification of Immune-Related Biomarkers for Sciatica in Peripheral Blood |
title_sort | identification of immune-related biomarkers for sciatica in peripheral blood |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677837/ https://www.ncbi.nlm.nih.gov/pubmed/34925462 http://dx.doi.org/10.3389/fgene.2021.781945 |
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