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Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus

BACKGROUND: The outbreak of novel coronavirus disease 2019 (COVID-19) has become a public health emergency of international concern. Quantitative testing of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus is demanded in evaluating the efficacy of antiviral drugs and vaccines and R...

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Autores principales: Jiang, Yushen, Zhang, Shanming, Qin, Hong, Meng, Shuai, Deng, Xuyi, Lin, He, Xin, Xiaoliang, Liang, Yuxin, Chen, Bowen, Cui, Yan, Su, YiHeng, Liang, Pei, Zhou, GuangZhi, Hu, Hongbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677905/
https://www.ncbi.nlm.nih.gov/pubmed/34920757
http://dx.doi.org/10.1186/s40001-021-00608-5
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author Jiang, Yushen
Zhang, Shanming
Qin, Hong
Meng, Shuai
Deng, Xuyi
Lin, He
Xin, Xiaoliang
Liang, Yuxin
Chen, Bowen
Cui, Yan
Su, YiHeng
Liang, Pei
Zhou, GuangZhi
Hu, Hongbo
author_facet Jiang, Yushen
Zhang, Shanming
Qin, Hong
Meng, Shuai
Deng, Xuyi
Lin, He
Xin, Xiaoliang
Liang, Yuxin
Chen, Bowen
Cui, Yan
Su, YiHeng
Liang, Pei
Zhou, GuangZhi
Hu, Hongbo
author_sort Jiang, Yushen
collection PubMed
description BACKGROUND: The outbreak of novel coronavirus disease 2019 (COVID-19) has become a public health emergency of international concern. Quantitative testing of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus is demanded in evaluating the efficacy of antiviral drugs and vaccines and RT-PCR can be widely deployed in the clinical assay of viral loads. Here, we developed a quantitative RT-PCR method for SARS-CoV-2 virus detection in this study. METHODS: RT-PCR kits targeting E (envelope) gene, N (nucleocapsid) gene and RdRP (RNA-dependent RNA polymerase) gene of SARS-CoV-2 from Roche Diagnostics were evaluated and E gene kit was employed for quantitative detection of COVID-19 virus using Cobas Z480. Viral load was calculated according to the standard curve established by series dilution of an E-gene RNA standard provided by Tib-Molbiol (a division of Roche Diagnostics). Assay performance was evaluated. RESULTS: The performance of the assay is acceptable with limit of detection (LOD) below 10E1 copies/μL and lower limit of quantification (LLOQ) as 10E2 copies/μL. CONCLUSION: A quantitative detection of the COVID-19 virus based on RT-PCR was established. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40001-021-00608-5.
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spelling pubmed-86779052021-12-17 Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus Jiang, Yushen Zhang, Shanming Qin, Hong Meng, Shuai Deng, Xuyi Lin, He Xin, Xiaoliang Liang, Yuxin Chen, Bowen Cui, Yan Su, YiHeng Liang, Pei Zhou, GuangZhi Hu, Hongbo Eur J Med Res Research BACKGROUND: The outbreak of novel coronavirus disease 2019 (COVID-19) has become a public health emergency of international concern. Quantitative testing of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus is demanded in evaluating the efficacy of antiviral drugs and vaccines and RT-PCR can be widely deployed in the clinical assay of viral loads. Here, we developed a quantitative RT-PCR method for SARS-CoV-2 virus detection in this study. METHODS: RT-PCR kits targeting E (envelope) gene, N (nucleocapsid) gene and RdRP (RNA-dependent RNA polymerase) gene of SARS-CoV-2 from Roche Diagnostics were evaluated and E gene kit was employed for quantitative detection of COVID-19 virus using Cobas Z480. Viral load was calculated according to the standard curve established by series dilution of an E-gene RNA standard provided by Tib-Molbiol (a division of Roche Diagnostics). Assay performance was evaluated. RESULTS: The performance of the assay is acceptable with limit of detection (LOD) below 10E1 copies/μL and lower limit of quantification (LLOQ) as 10E2 copies/μL. CONCLUSION: A quantitative detection of the COVID-19 virus based on RT-PCR was established. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40001-021-00608-5. BioMed Central 2021-12-17 /pmc/articles/PMC8677905/ /pubmed/34920757 http://dx.doi.org/10.1186/s40001-021-00608-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Jiang, Yushen
Zhang, Shanming
Qin, Hong
Meng, Shuai
Deng, Xuyi
Lin, He
Xin, Xiaoliang
Liang, Yuxin
Chen, Bowen
Cui, Yan
Su, YiHeng
Liang, Pei
Zhou, GuangZhi
Hu, Hongbo
Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus
title Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus
title_full Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus
title_fullStr Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus
title_full_unstemmed Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus
title_short Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus
title_sort establishment of a quantitative rt-pcr detection of sars-cov-2 virus
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677905/
https://www.ncbi.nlm.nih.gov/pubmed/34920757
http://dx.doi.org/10.1186/s40001-021-00608-5
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