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Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus
BACKGROUND: The outbreak of novel coronavirus disease 2019 (COVID-19) has become a public health emergency of international concern. Quantitative testing of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus is demanded in evaluating the efficacy of antiviral drugs and vaccines and R...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677905/ https://www.ncbi.nlm.nih.gov/pubmed/34920757 http://dx.doi.org/10.1186/s40001-021-00608-5 |
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author | Jiang, Yushen Zhang, Shanming Qin, Hong Meng, Shuai Deng, Xuyi Lin, He Xin, Xiaoliang Liang, Yuxin Chen, Bowen Cui, Yan Su, YiHeng Liang, Pei Zhou, GuangZhi Hu, Hongbo |
author_facet | Jiang, Yushen Zhang, Shanming Qin, Hong Meng, Shuai Deng, Xuyi Lin, He Xin, Xiaoliang Liang, Yuxin Chen, Bowen Cui, Yan Su, YiHeng Liang, Pei Zhou, GuangZhi Hu, Hongbo |
author_sort | Jiang, Yushen |
collection | PubMed |
description | BACKGROUND: The outbreak of novel coronavirus disease 2019 (COVID-19) has become a public health emergency of international concern. Quantitative testing of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus is demanded in evaluating the efficacy of antiviral drugs and vaccines and RT-PCR can be widely deployed in the clinical assay of viral loads. Here, we developed a quantitative RT-PCR method for SARS-CoV-2 virus detection in this study. METHODS: RT-PCR kits targeting E (envelope) gene, N (nucleocapsid) gene and RdRP (RNA-dependent RNA polymerase) gene of SARS-CoV-2 from Roche Diagnostics were evaluated and E gene kit was employed for quantitative detection of COVID-19 virus using Cobas Z480. Viral load was calculated according to the standard curve established by series dilution of an E-gene RNA standard provided by Tib-Molbiol (a division of Roche Diagnostics). Assay performance was evaluated. RESULTS: The performance of the assay is acceptable with limit of detection (LOD) below 10E1 copies/μL and lower limit of quantification (LLOQ) as 10E2 copies/μL. CONCLUSION: A quantitative detection of the COVID-19 virus based on RT-PCR was established. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40001-021-00608-5. |
format | Online Article Text |
id | pubmed-8677905 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-86779052021-12-17 Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus Jiang, Yushen Zhang, Shanming Qin, Hong Meng, Shuai Deng, Xuyi Lin, He Xin, Xiaoliang Liang, Yuxin Chen, Bowen Cui, Yan Su, YiHeng Liang, Pei Zhou, GuangZhi Hu, Hongbo Eur J Med Res Research BACKGROUND: The outbreak of novel coronavirus disease 2019 (COVID-19) has become a public health emergency of international concern. Quantitative testing of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus is demanded in evaluating the efficacy of antiviral drugs and vaccines and RT-PCR can be widely deployed in the clinical assay of viral loads. Here, we developed a quantitative RT-PCR method for SARS-CoV-2 virus detection in this study. METHODS: RT-PCR kits targeting E (envelope) gene, N (nucleocapsid) gene and RdRP (RNA-dependent RNA polymerase) gene of SARS-CoV-2 from Roche Diagnostics were evaluated and E gene kit was employed for quantitative detection of COVID-19 virus using Cobas Z480. Viral load was calculated according to the standard curve established by series dilution of an E-gene RNA standard provided by Tib-Molbiol (a division of Roche Diagnostics). Assay performance was evaluated. RESULTS: The performance of the assay is acceptable with limit of detection (LOD) below 10E1 copies/μL and lower limit of quantification (LLOQ) as 10E2 copies/μL. CONCLUSION: A quantitative detection of the COVID-19 virus based on RT-PCR was established. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40001-021-00608-5. BioMed Central 2021-12-17 /pmc/articles/PMC8677905/ /pubmed/34920757 http://dx.doi.org/10.1186/s40001-021-00608-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Jiang, Yushen Zhang, Shanming Qin, Hong Meng, Shuai Deng, Xuyi Lin, He Xin, Xiaoliang Liang, Yuxin Chen, Bowen Cui, Yan Su, YiHeng Liang, Pei Zhou, GuangZhi Hu, Hongbo Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus |
title | Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus |
title_full | Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus |
title_fullStr | Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus |
title_full_unstemmed | Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus |
title_short | Establishment of a quantitative RT-PCR detection of SARS-CoV-2 virus |
title_sort | establishment of a quantitative rt-pcr detection of sars-cov-2 virus |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677905/ https://www.ncbi.nlm.nih.gov/pubmed/34920757 http://dx.doi.org/10.1186/s40001-021-00608-5 |
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