Cargando…

Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device

The photopic negative response of the full-field electroretinogram (ERG) is reduced in optic neuropathies. However, technical requirements for measurement and poor classification performance have limited widespread clinical application. Recent advances in hardware facilitate efficient clinic-based r...

Descripción completa

Detalles Bibliográficos
Autores principales: Diao, Tina, Kushzad, Fareshta, Patel, Megh D., Bindiganavale, Megha P., Wasi, Munam, Kochenderfer, Mykel J., Moss, Heather E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677942/
https://www.ncbi.nlm.nih.gov/pubmed/34926514
http://dx.doi.org/10.3389/fmed.2021.771713
_version_ 1784616244390920192
author Diao, Tina
Kushzad, Fareshta
Patel, Megh D.
Bindiganavale, Megha P.
Wasi, Munam
Kochenderfer, Mykel J.
Moss, Heather E.
author_facet Diao, Tina
Kushzad, Fareshta
Patel, Megh D.
Bindiganavale, Megha P.
Wasi, Munam
Kochenderfer, Mykel J.
Moss, Heather E.
author_sort Diao, Tina
collection PubMed
description The photopic negative response of the full-field electroretinogram (ERG) is reduced in optic neuropathies. However, technical requirements for measurement and poor classification performance have limited widespread clinical application. Recent advances in hardware facilitate efficient clinic-based recording of the full-field ERG. Time series classification, a machine learning approach, may improve classification by using the entire ERG waveform as the input. In this study, full-field ERGs were recorded in 217 eyes (109 optic neuropathy and 108 controls) of 155 subjects. User-defined ERG features including photopic negative response were reduced in optic neuropathy eyes (p < 0.0005, generalized estimating equation models accounting for age). However, classification of optic neuropathy based on user-defined features was only fair with receiver operating characteristic area under the curve ranging between 0.62 and 0.68 and F1 score at the optimal cutoff ranging between 0.30 and 0.33. In comparison, machine learning classifiers using a variety of time series analysis approaches had F1 scores of 0.58–0.76 on a test data set. Time series classifications are promising for improving optic neuropathy diagnosis using ERG waveforms. Larger sample sizes will be important to refine the models.
format Online
Article
Text
id pubmed-8677942
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-86779422021-12-18 Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device Diao, Tina Kushzad, Fareshta Patel, Megh D. Bindiganavale, Megha P. Wasi, Munam Kochenderfer, Mykel J. Moss, Heather E. Front Med (Lausanne) Medicine The photopic negative response of the full-field electroretinogram (ERG) is reduced in optic neuropathies. However, technical requirements for measurement and poor classification performance have limited widespread clinical application. Recent advances in hardware facilitate efficient clinic-based recording of the full-field ERG. Time series classification, a machine learning approach, may improve classification by using the entire ERG waveform as the input. In this study, full-field ERGs were recorded in 217 eyes (109 optic neuropathy and 108 controls) of 155 subjects. User-defined ERG features including photopic negative response were reduced in optic neuropathy eyes (p < 0.0005, generalized estimating equation models accounting for age). However, classification of optic neuropathy based on user-defined features was only fair with receiver operating characteristic area under the curve ranging between 0.62 and 0.68 and F1 score at the optimal cutoff ranging between 0.30 and 0.33. In comparison, machine learning classifiers using a variety of time series analysis approaches had F1 scores of 0.58–0.76 on a test data set. Time series classifications are promising for improving optic neuropathy diagnosis using ERG waveforms. Larger sample sizes will be important to refine the models. Frontiers Media S.A. 2021-12-03 /pmc/articles/PMC8677942/ /pubmed/34926514 http://dx.doi.org/10.3389/fmed.2021.771713 Text en Copyright © 2021 Diao, Kushzad, Patel, Bindiganavale, Wasi, Kochenderfer and Moss. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Diao, Tina
Kushzad, Fareshta
Patel, Megh D.
Bindiganavale, Megha P.
Wasi, Munam
Kochenderfer, Mykel J.
Moss, Heather E.
Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device
title Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device
title_full Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device
title_fullStr Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device
title_full_unstemmed Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device
title_short Comparison of Machine Learning Approaches to Improve Diagnosis of Optic Neuropathy Using Photopic Negative Response Measured Using a Handheld Device
title_sort comparison of machine learning approaches to improve diagnosis of optic neuropathy using photopic negative response measured using a handheld device
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677942/
https://www.ncbi.nlm.nih.gov/pubmed/34926514
http://dx.doi.org/10.3389/fmed.2021.771713
work_keys_str_mv AT diaotina comparisonofmachinelearningapproachestoimprovediagnosisofopticneuropathyusingphotopicnegativeresponsemeasuredusingahandhelddevice
AT kushzadfareshta comparisonofmachinelearningapproachestoimprovediagnosisofopticneuropathyusingphotopicnegativeresponsemeasuredusingahandhelddevice
AT patelmeghd comparisonofmachinelearningapproachestoimprovediagnosisofopticneuropathyusingphotopicnegativeresponsemeasuredusingahandhelddevice
AT bindiganavalemeghap comparisonofmachinelearningapproachestoimprovediagnosisofopticneuropathyusingphotopicnegativeresponsemeasuredusingahandhelddevice
AT wasimunam comparisonofmachinelearningapproachestoimprovediagnosisofopticneuropathyusingphotopicnegativeresponsemeasuredusingahandhelddevice
AT kochenderfermykelj comparisonofmachinelearningapproachestoimprovediagnosisofopticneuropathyusingphotopicnegativeresponsemeasuredusingahandhelddevice
AT mossheathere comparisonofmachinelearningapproachestoimprovediagnosisofopticneuropathyusingphotopicnegativeresponsemeasuredusingahandhelddevice