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Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis

Rheumatoid arthritis (RA) is one of the most common autoimmune joint disorders globally, but its pathophysiological mechanisms have not been thoroughly investigated. Pyroptosis significantly correlates with programmed cell death. However, targeting pyroptosis has not been considered as a therapeutic...

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Autores principales: Xie, Wei, Wu, Zhengyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677948/
https://www.ncbi.nlm.nih.gov/pubmed/34918712
http://dx.doi.org/10.1097/MD.0000000000028321
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author Xie, Wei
Wu, Zhengyuan
author_facet Xie, Wei
Wu, Zhengyuan
author_sort Xie, Wei
collection PubMed
description Rheumatoid arthritis (RA) is one of the most common autoimmune joint disorders globally, but its pathophysiological mechanisms have not been thoroughly investigated. Pyroptosis significantly correlates with programmed cell death. However, targeting pyroptosis has not been considered as a therapeutic strategy in RA due to a lack of systematic studies on validated biomarkers. The present study aimed to identify hub pyroptosis biomarkers and immune infiltration in RA. The gene expression profiles of synovial tissues were obtained from the Gene Expression Omnibus (GEO) database to identify differentially expressed pyroptosis genes (DEPGs). Meanwhile, the CIBERSORT algorithm was used to explore the association between immune infiltration and RA. Consequently, two hub DEPGs (EGFR and JUN) were identified as critical genes in RA. Through gene ontology and pathway enrichment analysis. EGFR and JUN were found to be primarily involved in the ErbB signaling pathway, PD-1 checkpoint pathway, GnRH signaling pathway, etc. Furthermore, for immune infiltration analysis, the pyroptosis genes EGFR and JUN were closely connected with four and one immune cell types, respectively. Overall, this study presents a novel method to identify hub DEPGs and their correlation with immune infiltration, which may provide novel perspectives into the diagnosis and treatment of patients with RA.
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spelling pubmed-86779482021-12-20 Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis Xie, Wei Wu, Zhengyuan Medicine (Baltimore) 6900 Rheumatoid arthritis (RA) is one of the most common autoimmune joint disorders globally, but its pathophysiological mechanisms have not been thoroughly investigated. Pyroptosis significantly correlates with programmed cell death. However, targeting pyroptosis has not been considered as a therapeutic strategy in RA due to a lack of systematic studies on validated biomarkers. The present study aimed to identify hub pyroptosis biomarkers and immune infiltration in RA. The gene expression profiles of synovial tissues were obtained from the Gene Expression Omnibus (GEO) database to identify differentially expressed pyroptosis genes (DEPGs). Meanwhile, the CIBERSORT algorithm was used to explore the association between immune infiltration and RA. Consequently, two hub DEPGs (EGFR and JUN) were identified as critical genes in RA. Through gene ontology and pathway enrichment analysis. EGFR and JUN were found to be primarily involved in the ErbB signaling pathway, PD-1 checkpoint pathway, GnRH signaling pathway, etc. Furthermore, for immune infiltration analysis, the pyroptosis genes EGFR and JUN were closely connected with four and one immune cell types, respectively. Overall, this study presents a novel method to identify hub DEPGs and their correlation with immune infiltration, which may provide novel perspectives into the diagnosis and treatment of patients with RA. Lippincott Williams & Wilkins 2021-12-17 /pmc/articles/PMC8677948/ /pubmed/34918712 http://dx.doi.org/10.1097/MD.0000000000028321 Text en Copyright © 2021 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/licenses/by/4.0 (https://creativecommons.org/licenses/by/4.0/)
spellingShingle 6900
Xie, Wei
Wu, Zhengyuan
Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis
title Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis
title_full Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis
title_fullStr Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis
title_full_unstemmed Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis
title_short Identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis
title_sort identifying the hub genes and immune infiltration related to pyroptosis in rheumatoid arthritis
topic 6900
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8677948/
https://www.ncbi.nlm.nih.gov/pubmed/34918712
http://dx.doi.org/10.1097/MD.0000000000028321
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