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Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications

G-quadruplex (G4)/hemin DNAzyme is promising horseradish peroxidase (HRP)-mimic candidate in the biological field. However, its relatively unsatisfactory catalytic capacity limits the potential applications. Inspired by nature protease, we conducted a proximity-enhanced cofactor assembly strategy (P...

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Autores principales: Li, Jia, Wu, Haiping, Yan, Yurong, Yuan, Taixian, Shu, Yue, Gao, Xin, Zhang, Lu, Li, Siqiao, Ding, Shijia, Cheng, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8682752/
https://www.ncbi.nlm.nih.gov/pubmed/34878146
http://dx.doi.org/10.1093/nar/gkab1178
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author Li, Jia
Wu, Haiping
Yan, Yurong
Yuan, Taixian
Shu, Yue
Gao, Xin
Zhang, Lu
Li, Siqiao
Ding, Shijia
Cheng, Wei
author_facet Li, Jia
Wu, Haiping
Yan, Yurong
Yuan, Taixian
Shu, Yue
Gao, Xin
Zhang, Lu
Li, Siqiao
Ding, Shijia
Cheng, Wei
author_sort Li, Jia
collection PubMed
description G-quadruplex (G4)/hemin DNAzyme is promising horseradish peroxidase (HRP)-mimic candidate in the biological field. However, its relatively unsatisfactory catalytic capacity limits the potential applications. Inspired by nature protease, we conducted a proximity-enhanced cofactor assembly strategy (PECA) to form an exceptional HRP mimic, namely zippered G4/hemin DNAzyme (Z-G4/H). The hybridization of short oligonucleotides induced proximity assembly of the DNA-grafted hemin (DGH) with the complementary G4 sequences (cG4s), mimicking the tight configuration of protease cofactor and apoenzyme. The detailed investigations of catalytic efficiency and mechanism verified the higher activity, more rapid catalytic rate and high environmental tolerance of the Z-G4/H than the classical G4/hemin DNAzymes (C-G4/H). Furthermore, a proximity recognition transducer has been developed based on the PECA for sensitive detection of gene rearrangement and imaging human epidermal growth factor receptor 2 protein (HER2) dimerization on cell surfaces. Our studies demonstrate the high efficiency of Z-G4/H and its universal application potential in clinical diagnostics and biomolecule interaction research. It also may offer significant opportunities and inspiration for the engineering of the protease-free mimic enzyme.
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spelling pubmed-86827522021-12-20 Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications Li, Jia Wu, Haiping Yan, Yurong Yuan, Taixian Shu, Yue Gao, Xin Zhang, Lu Li, Siqiao Ding, Shijia Cheng, Wei Nucleic Acids Res Nucleic Acid Enzymes G-quadruplex (G4)/hemin DNAzyme is promising horseradish peroxidase (HRP)-mimic candidate in the biological field. However, its relatively unsatisfactory catalytic capacity limits the potential applications. Inspired by nature protease, we conducted a proximity-enhanced cofactor assembly strategy (PECA) to form an exceptional HRP mimic, namely zippered G4/hemin DNAzyme (Z-G4/H). The hybridization of short oligonucleotides induced proximity assembly of the DNA-grafted hemin (DGH) with the complementary G4 sequences (cG4s), mimicking the tight configuration of protease cofactor and apoenzyme. The detailed investigations of catalytic efficiency and mechanism verified the higher activity, more rapid catalytic rate and high environmental tolerance of the Z-G4/H than the classical G4/hemin DNAzymes (C-G4/H). Furthermore, a proximity recognition transducer has been developed based on the PECA for sensitive detection of gene rearrangement and imaging human epidermal growth factor receptor 2 protein (HER2) dimerization on cell surfaces. Our studies demonstrate the high efficiency of Z-G4/H and its universal application potential in clinical diagnostics and biomolecule interaction research. It also may offer significant opportunities and inspiration for the engineering of the protease-free mimic enzyme. Oxford University Press 2021-12-08 /pmc/articles/PMC8682752/ /pubmed/34878146 http://dx.doi.org/10.1093/nar/gkab1178 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Nucleic Acid Enzymes
Li, Jia
Wu, Haiping
Yan, Yurong
Yuan, Taixian
Shu, Yue
Gao, Xin
Zhang, Lu
Li, Siqiao
Ding, Shijia
Cheng, Wei
Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications
title Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications
title_full Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications
title_fullStr Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications
title_full_unstemmed Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications
title_short Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications
title_sort zippered g-quadruplex/hemin dnazyme: exceptional catalyst for universal bioanalytical applications
topic Nucleic Acid Enzymes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8682752/
https://www.ncbi.nlm.nih.gov/pubmed/34878146
http://dx.doi.org/10.1093/nar/gkab1178
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