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Estimating the impact of interventions against COVID-19: From lockdown to vaccination

Coronavirus disease 2019 (COVID-19) is an infectious disease of humans caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Since the first case was identified in China in December 2019 the disease has spread worldwide, leading to an ongoing pandemic. In this article, we present a...

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Autores principales: Thompson, James, Wattam, Stephen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8683038/
https://www.ncbi.nlm.nih.gov/pubmed/34919576
http://dx.doi.org/10.1371/journal.pone.0261330
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author Thompson, James
Wattam, Stephen
author_facet Thompson, James
Wattam, Stephen
author_sort Thompson, James
collection PubMed
description Coronavirus disease 2019 (COVID-19) is an infectious disease of humans caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Since the first case was identified in China in December 2019 the disease has spread worldwide, leading to an ongoing pandemic. In this article, we present an agent-based model of COVID-19 in Luxembourg, and use it to estimate the impact, on cases and deaths, of interventions including testing, contact tracing, lockdown, curfew and vaccination. Our model is based on collation, with agents performing activities and moving between locations accordingly. The model is highly heterogeneous, featuring spatial clustering, over 2000 behavioural types and a 10 minute time resolution. The model is validated against COVID-19 clinical monitoring data collected in Luxembourg in 2020. Our model predicts far fewer cases and deaths than the equivalent equation-based SEIR model. In particular, with R(0) = 2.45, the SEIR model infects 87% of the resident population while our agent-based model infects only around 23% of the resident population. Our simulations suggest that testing and contract tracing reduce cases substantially, but are less effective at reducing deaths. Lockdowns are very effective although costly, while the impact of an 11pm-6am curfew is relatively small. When vaccinating against a future outbreak, our results suggest that herd immunity can be achieved at relatively low coverage, with substantial levels of protection achieved with only 30% of the population fully immune. When vaccinating in the midst of an outbreak, the challenge is more difficult. In this context, we investigate the impact of vaccine efficacy, capacity, hesitancy and strategy. We conclude that, short of a permanent lockdown, vaccination is by far the most effective way to suppress and ultimately control the spread of COVID-19.
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spelling pubmed-86830382021-12-18 Estimating the impact of interventions against COVID-19: From lockdown to vaccination Thompson, James Wattam, Stephen PLoS One Research Article Coronavirus disease 2019 (COVID-19) is an infectious disease of humans caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Since the first case was identified in China in December 2019 the disease has spread worldwide, leading to an ongoing pandemic. In this article, we present an agent-based model of COVID-19 in Luxembourg, and use it to estimate the impact, on cases and deaths, of interventions including testing, contact tracing, lockdown, curfew and vaccination. Our model is based on collation, with agents performing activities and moving between locations accordingly. The model is highly heterogeneous, featuring spatial clustering, over 2000 behavioural types and a 10 minute time resolution. The model is validated against COVID-19 clinical monitoring data collected in Luxembourg in 2020. Our model predicts far fewer cases and deaths than the equivalent equation-based SEIR model. In particular, with R(0) = 2.45, the SEIR model infects 87% of the resident population while our agent-based model infects only around 23% of the resident population. Our simulations suggest that testing and contract tracing reduce cases substantially, but are less effective at reducing deaths. Lockdowns are very effective although costly, while the impact of an 11pm-6am curfew is relatively small. When vaccinating against a future outbreak, our results suggest that herd immunity can be achieved at relatively low coverage, with substantial levels of protection achieved with only 30% of the population fully immune. When vaccinating in the midst of an outbreak, the challenge is more difficult. In this context, we investigate the impact of vaccine efficacy, capacity, hesitancy and strategy. We conclude that, short of a permanent lockdown, vaccination is by far the most effective way to suppress and ultimately control the spread of COVID-19. Public Library of Science 2021-12-17 /pmc/articles/PMC8683038/ /pubmed/34919576 http://dx.doi.org/10.1371/journal.pone.0261330 Text en © 2021 Thompson, Wattam https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Thompson, James
Wattam, Stephen
Estimating the impact of interventions against COVID-19: From lockdown to vaccination
title Estimating the impact of interventions against COVID-19: From lockdown to vaccination
title_full Estimating the impact of interventions against COVID-19: From lockdown to vaccination
title_fullStr Estimating the impact of interventions against COVID-19: From lockdown to vaccination
title_full_unstemmed Estimating the impact of interventions against COVID-19: From lockdown to vaccination
title_short Estimating the impact of interventions against COVID-19: From lockdown to vaccination
title_sort estimating the impact of interventions against covid-19: from lockdown to vaccination
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8683038/
https://www.ncbi.nlm.nih.gov/pubmed/34919576
http://dx.doi.org/10.1371/journal.pone.0261330
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