Cargando…

UCEasy: A software package for automating and simplifying the analysis of ultraconserved elements (UCEs)

BACKGROUND: The use of Ultraconserved Elements (UCEs) as genetic markers in phylogenomics has become popular and has provided promising results. Although UCE data can be easily obtained from targeted enriched sequencing, the protocol for in silico analysis of UCEs consist of the execution of heterog...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ribeiro, Caio V. R., Oliveira, Lucas P., Batista, Romina, De Sousa, Marcos
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Pensoft Publishers 2021
Materias:	Software Description
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8683391/ https://www.ncbi.nlm.nih.gov/pubmed/34934383 http://dx.doi.org/10.3897/BDJ.9.e78132

Ejemplares similares

The Supertree Toolkit 2: a new and improved software package with a Graphical User Interface for supertree construction
por: Hill, Jon, et al.
Publicado: (2014)

Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils
por: Van Dam, Matthew H., et al.
Publicado: (2017)

Correction: Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils
por: Van Dam, Matthew H., et al.
Publicado: (2018)

An Ultraconserved Element (UCE) controls homeostatic splicing of ARGLU1 mRNA
por: Pirnie, Stephan P., et al.
Publicado: (2017)

Rapid Least Concern: towards automating Red List assessments
por: Bachman, Steven, et al.
Publicado: (2020)

A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control
por: Mathew, Cherian, et al.
Publicado: (2014)

Software infrastructure and data pipelines established for technical interoperability within a cross-border cooperation for the flora of the Bohemian Forest
por: Novotný, Petr, et al.
Publicado: (2022)

Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event
por: Winker, Kevin, et al.
Publicado: (2018)

Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization
por: Gustafson, Grey T., et al.
Publicado: (2019)

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)
por: Faircloth, Brant C., et al.
Publicado: (2013)

Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays
por: Vinciguerra, Nicholas T., et al.
Publicado: (2019)

Open source data logger for low-cost environmental monitoring
por: Baker, Ed
Publicado: (2014)

The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth
por: Parr, Cynthia S., et al.
Publicado: (2014)

Symbiota – A virtual platform for creating voucher-based biodiversity information communities
por: Gries, Corinna, et al.
Publicado: (2014)

The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research
por: Leidenberger, Sonja, et al.
Publicado: (2016)

A Preliminary Investigation of Reversing RML: From an RDF dataset to its Column-Based data source
por: Allocca, Carlo, et al.
Publicado: (2015)

Displaying bias in sampling effort of data accessed from biodiversity databases using ignorance maps
por: Ruete, Alejandro
Publicado: (2015)

LifeWatch Greece data-services: Discovering Biodiversity Data using Semantic Web Technologies
por: Minadakis, Nikos, et al.
Publicado: (2016)

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
por: Varsos, Constantinos, et al.
Publicado: (2016)

LifeWatchGreece Portal development: architecture, implementation and challenges for a biodiversity research e-infrastructure
por: Gougousis, Alexandros, et al.
Publicado: (2016)

India Biodiversity Portal: An integrated, interactive and participatory biodiversity informatics platform
por: Vattakaven, Thomas, et al.
Publicado: (2016)

Micro-CT(vlab): A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT)
por: Keklikoglou, Kleoniki, et al.
Publicado: (2016)

Biodiversity Observations Miner: A web application to unlock primary biodiversity data from published literature
por: Muñoz, Gabriel, et al.
Publicado: (2019)

Biologer: an open platform for collecting biodiversity data
por: Popović, Miloš, et al.
Publicado: (2020)

Ecological interactions in the Scratchpads virtual research environment
por: Baker, Edward, et al.
Publicado: (2019)

An open-source, citizen science and machine learning approach to analyse subsea movies
por: Anton, Victor, et al.
Publicado: (2021)

EcoBank: A flexible database platform for sharing ecological data
por: Kim, Hyun Woo, et al.
Publicado: (2021)

Infrastructure and Population of the OpenBiodiv Biodiversity Knowledge Graph
por: Dimitrova, Mariya, et al.
Publicado: (2021)

BEXIS2: A FAIR-aligned data management system for biodiversity, ecology and environmental data
por: Chamanara, Javad, et al.
Publicado: (2021)

Pladias platform: Technical description of the database structure
por: Novotný, Petr, et al.
Publicado: (2022)

Ali-Bey - an open collaborative georeferencing web application
por: Marcer, Arnald, et al.
Publicado: (2022)

SNP4OrphanSpecies: A bioinformatics pipeline to isolate molecular markers for studying genetic diversity of orphan species
por: Penaud, Benjamin, et al.
Publicado: (2022)

Advances in the REDCAT software package
por: Schmidt, Chris, et al.
Publicado: (2013)

STXMPy: a new software package for automated region of interest selection and statistical analysis of XANES data
por: Haraszti, Tamás, et al.
Publicado: (2010)

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences
por: Banerjee, Sagnik, et al.
Publicado: (2021)

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
por: Jaitly, Navdeep, et al.
Publicado: (2009)

Eval: A software package for analysis of genome annotations
por: Keibler, Evan, et al.
Publicado: (2003)

A software package for immunologists to learn simulation modeling
por: Handel, Andreas
Publicado: (2020)

BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets
por: Alston, Mark J, et al.
Publicado: (2010)

Mfuzz: A software package for soft clustering of microarray data
por: Kumar, Lokesh, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_e9a7tev2256cj7k9ahebiaa285