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Functional random forests for curve response
The rapid advancement of functional data in various application fields has increased the demand for advanced statistical approaches that can incorporate complex structures and nonlinear associations. In this article, we propose a novel functional random forests (FunFor) approach to model the functio...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8683425/ https://www.ncbi.nlm.nih.gov/pubmed/34921167 http://dx.doi.org/10.1038/s41598-021-02265-4 |
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author | Fu, Guifang Dai, Xiaotian Liang, Yeheng |
author_facet | Fu, Guifang Dai, Xiaotian Liang, Yeheng |
author_sort | Fu, Guifang |
collection | PubMed |
description | The rapid advancement of functional data in various application fields has increased the demand for advanced statistical approaches that can incorporate complex structures and nonlinear associations. In this article, we propose a novel functional random forests (FunFor) approach to model the functional data response that is densely and regularly measured, as an extension of the landmark work of Breiman, who introduced traditional random forests for a univariate response. The FunFor approach is able to predict curve responses for new observations and selects important variables from a large set of scalar predictors. The FunFor approach inherits the efficiency of the traditional random forest approach in detecting complex relationships, including nonlinear and high-order interactions. Additionally, it is a non-parametric approach without the imposition of parametric and distributional assumptions. Eight simulation settings and one real-data analysis consistently demonstrate the excellent performance of the FunFor approach in various scenarios. In particular, FunFor successfully ranks the true predictors as the most important variables, while achieving the most robust variable sections and the smallest prediction errors when comparing it with three other relevant approaches. Although motivated by a biological leaf shape data analysis, the proposed FunFor approach has great potential to be widely applied in various fields due to its minimal requirement on tuning parameters and its distribution-free and model-free nature. An R package named ’FunFor’, implementing the FunFor approach, is available at GitHub. |
format | Online Article Text |
id | pubmed-8683425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-86834252021-12-20 Functional random forests for curve response Fu, Guifang Dai, Xiaotian Liang, Yeheng Sci Rep Article The rapid advancement of functional data in various application fields has increased the demand for advanced statistical approaches that can incorporate complex structures and nonlinear associations. In this article, we propose a novel functional random forests (FunFor) approach to model the functional data response that is densely and regularly measured, as an extension of the landmark work of Breiman, who introduced traditional random forests for a univariate response. The FunFor approach is able to predict curve responses for new observations and selects important variables from a large set of scalar predictors. The FunFor approach inherits the efficiency of the traditional random forest approach in detecting complex relationships, including nonlinear and high-order interactions. Additionally, it is a non-parametric approach without the imposition of parametric and distributional assumptions. Eight simulation settings and one real-data analysis consistently demonstrate the excellent performance of the FunFor approach in various scenarios. In particular, FunFor successfully ranks the true predictors as the most important variables, while achieving the most robust variable sections and the smallest prediction errors when comparing it with three other relevant approaches. Although motivated by a biological leaf shape data analysis, the proposed FunFor approach has great potential to be widely applied in various fields due to its minimal requirement on tuning parameters and its distribution-free and model-free nature. An R package named ’FunFor’, implementing the FunFor approach, is available at GitHub. Nature Publishing Group UK 2021-12-17 /pmc/articles/PMC8683425/ /pubmed/34921167 http://dx.doi.org/10.1038/s41598-021-02265-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Fu, Guifang Dai, Xiaotian Liang, Yeheng Functional random forests for curve response |
title | Functional random forests for curve response |
title_full | Functional random forests for curve response |
title_fullStr | Functional random forests for curve response |
title_full_unstemmed | Functional random forests for curve response |
title_short | Functional random forests for curve response |
title_sort | functional random forests for curve response |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8683425/ https://www.ncbi.nlm.nih.gov/pubmed/34921167 http://dx.doi.org/10.1038/s41598-021-02265-4 |
work_keys_str_mv | AT fuguifang functionalrandomforestsforcurveresponse AT daixiaotian functionalrandomforestsforcurveresponse AT liangyeheng functionalrandomforestsforcurveresponse |