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Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group

BACKGROUND: The National Cancer Institute Informatics Technology for Cancer Research (ITCR) program provides a series of funding mechanisms to create an ecosystem of open-source software (OSS) that serves the needs of cancer research. As the ITCR ecosystem substantially grows, it faces the challenge...

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Autores principales: Ye, Ye, Barapatre, Seemran, Davis, Michael K, Elliston, Keith O, Davatzikos, Christos, Fedorov, Andrey, Fillion-Robin, Jean-Christophe, Foster, Ian, Gilbertson, John R, Lasso, Andras, Miller, James V, Morgan, Martin, Pieper, Steve, Raumann, Brigitte E, Sarachan, Brion D, Savova, Guergana, Silverstein, Jonathan C, Taylor, Donald P, Zelnis, Joyce B, Zhang, Guo-Qiang, Cuticchia, Jamie, Becich, Michael J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8686402/
https://www.ncbi.nlm.nih.gov/pubmed/34860667
http://dx.doi.org/10.2196/20028
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author Ye, Ye
Barapatre, Seemran
Davis, Michael K
Elliston, Keith O
Davatzikos, Christos
Fedorov, Andrey
Fillion-Robin, Jean-Christophe
Foster, Ian
Gilbertson, John R
Lasso, Andras
Miller, James V
Morgan, Martin
Pieper, Steve
Raumann, Brigitte E
Sarachan, Brion D
Savova, Guergana
Silverstein, Jonathan C
Taylor, Donald P
Zelnis, Joyce B
Zhang, Guo-Qiang
Cuticchia, Jamie
Becich, Michael J
author_facet Ye, Ye
Barapatre, Seemran
Davis, Michael K
Elliston, Keith O
Davatzikos, Christos
Fedorov, Andrey
Fillion-Robin, Jean-Christophe
Foster, Ian
Gilbertson, John R
Lasso, Andras
Miller, James V
Morgan, Martin
Pieper, Steve
Raumann, Brigitte E
Sarachan, Brion D
Savova, Guergana
Silverstein, Jonathan C
Taylor, Donald P
Zelnis, Joyce B
Zhang, Guo-Qiang
Cuticchia, Jamie
Becich, Michael J
author_sort Ye, Ye
collection PubMed
description BACKGROUND: The National Cancer Institute Informatics Technology for Cancer Research (ITCR) program provides a series of funding mechanisms to create an ecosystem of open-source software (OSS) that serves the needs of cancer research. As the ITCR ecosystem substantially grows, it faces the challenge of the long-term sustainability of the software being developed by ITCR grantees. To address this challenge, the ITCR sustainability and industry partnership working group (SIP-WG) was convened in 2019. OBJECTIVE: The charter of the SIP-WG is to investigate options to enhance the long-term sustainability of the OSS being developed by ITCR, in part by developing a collection of business model archetypes that can serve as sustainability plans for ITCR OSS development initiatives. The working group assembled models from the ITCR program, from other studies, and from the engagement of its extensive network of relationships with other organizations (eg, Chan Zuckerberg Initiative, Open Source Initiative, and Software Sustainability Institute) in support of this objective. METHODS: This paper reviews the existing sustainability models and describes 10 OSS use cases disseminated by the SIP-WG and others, including 3D Slicer, Bioconductor, Cytoscape, Globus, i2b2 (Informatics for Integrating Biology and the Bedside) and tranSMART, Insight Toolkit, Linux, Observational Health Data Sciences and Informatics tools, R, and REDCap (Research Electronic Data Capture), in 10 sustainability aspects: governance, documentation, code quality, support, ecosystem collaboration, security, legal, finance, marketing, and dependency hygiene. RESULTS: Information available to the public reveals that all 10 OSS have effective governance, comprehensive documentation, high code quality, reliable dependency hygiene, strong user and developer support, and active marketing. These OSS include a variety of licensing models (eg, general public license version 2, general public license version 3, Berkeley Software Distribution, and Apache 3) and financial models (eg, federal research funding, industry and membership support, and commercial support). However, detailed information on ecosystem collaboration and security is not publicly provided by most OSS. CONCLUSIONS: We recommend 6 essential attributes for research software: alignment with unmet scientific needs, a dedicated development team, a vibrant user community, a feasible licensing model, a sustainable financial model, and effective product management. We also stress important actions to be considered in future ITCR activities that involve the discussion of the sustainability and licensing models for ITCR OSS, the establishment of a central library, the allocation of consulting resources to code quality control, ecosystem collaboration, security, and dependency hygiene.
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spelling pubmed-86864022022-01-10 Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group Ye, Ye Barapatre, Seemran Davis, Michael K Elliston, Keith O Davatzikos, Christos Fedorov, Andrey Fillion-Robin, Jean-Christophe Foster, Ian Gilbertson, John R Lasso, Andras Miller, James V Morgan, Martin Pieper, Steve Raumann, Brigitte E Sarachan, Brion D Savova, Guergana Silverstein, Jonathan C Taylor, Donald P Zelnis, Joyce B Zhang, Guo-Qiang Cuticchia, Jamie Becich, Michael J J Med Internet Res Viewpoint BACKGROUND: The National Cancer Institute Informatics Technology for Cancer Research (ITCR) program provides a series of funding mechanisms to create an ecosystem of open-source software (OSS) that serves the needs of cancer research. As the ITCR ecosystem substantially grows, it faces the challenge of the long-term sustainability of the software being developed by ITCR grantees. To address this challenge, the ITCR sustainability and industry partnership working group (SIP-WG) was convened in 2019. OBJECTIVE: The charter of the SIP-WG is to investigate options to enhance the long-term sustainability of the OSS being developed by ITCR, in part by developing a collection of business model archetypes that can serve as sustainability plans for ITCR OSS development initiatives. The working group assembled models from the ITCR program, from other studies, and from the engagement of its extensive network of relationships with other organizations (eg, Chan Zuckerberg Initiative, Open Source Initiative, and Software Sustainability Institute) in support of this objective. METHODS: This paper reviews the existing sustainability models and describes 10 OSS use cases disseminated by the SIP-WG and others, including 3D Slicer, Bioconductor, Cytoscape, Globus, i2b2 (Informatics for Integrating Biology and the Bedside) and tranSMART, Insight Toolkit, Linux, Observational Health Data Sciences and Informatics tools, R, and REDCap (Research Electronic Data Capture), in 10 sustainability aspects: governance, documentation, code quality, support, ecosystem collaboration, security, legal, finance, marketing, and dependency hygiene. RESULTS: Information available to the public reveals that all 10 OSS have effective governance, comprehensive documentation, high code quality, reliable dependency hygiene, strong user and developer support, and active marketing. These OSS include a variety of licensing models (eg, general public license version 2, general public license version 3, Berkeley Software Distribution, and Apache 3) and financial models (eg, federal research funding, industry and membership support, and commercial support). However, detailed information on ecosystem collaboration and security is not publicly provided by most OSS. CONCLUSIONS: We recommend 6 essential attributes for research software: alignment with unmet scientific needs, a dedicated development team, a vibrant user community, a feasible licensing model, a sustainable financial model, and effective product management. We also stress important actions to be considered in future ITCR activities that involve the discussion of the sustainability and licensing models for ITCR OSS, the establishment of a central library, the allocation of consulting resources to code quality control, ecosystem collaboration, security, and dependency hygiene. JMIR Publications 2021-12-02 /pmc/articles/PMC8686402/ /pubmed/34860667 http://dx.doi.org/10.2196/20028 Text en ©Ye Ye, Seemran Barapatre, Michael K Davis, Keith O Elliston, Christos Davatzikos, Andrey Fedorov, Jean-Christophe Fillion-Robin, Ian Foster, John R Gilbertson, Andras Lasso, James V Miller, Martin Morgan, Steve Pieper, Brigitte E Raumann, Brion D Sarachan, Guergana Savova, Jonathan C Silverstein, Donald P Taylor, Joyce B Zelnis, Guo-Qiang Zhang, Jamie Cuticchia, Michael J Becich. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 02.12.2021. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on https://www.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Viewpoint
Ye, Ye
Barapatre, Seemran
Davis, Michael K
Elliston, Keith O
Davatzikos, Christos
Fedorov, Andrey
Fillion-Robin, Jean-Christophe
Foster, Ian
Gilbertson, John R
Lasso, Andras
Miller, James V
Morgan, Martin
Pieper, Steve
Raumann, Brigitte E
Sarachan, Brion D
Savova, Guergana
Silverstein, Jonathan C
Taylor, Donald P
Zelnis, Joyce B
Zhang, Guo-Qiang
Cuticchia, Jamie
Becich, Michael J
Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group
title Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group
title_full Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group
title_fullStr Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group
title_full_unstemmed Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group
title_short Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group
title_sort open-source software sustainability models: initial white paper from the informatics technology for cancer research sustainability and industry partnership working group
topic Viewpoint
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8686402/
https://www.ncbi.nlm.nih.gov/pubmed/34860667
http://dx.doi.org/10.2196/20028
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