Cargando…

Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli

OBJECTIVE: The aims of this research were to determine the genomic properties of BI-EHEC to control Enterohemorrhagic Escherichia coli (EHEC), which was isolated from previous study. Genomic analysis of this phage is essential for the assessment of this bacteriophage for further application as food...

Descripción completa

Detalles Bibliográficos
Autores principales: Dewanggana, Marta Nisita, Waturangi, Diana Elizabeth, Yogiara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8686590/
https://www.ncbi.nlm.nih.gov/pubmed/34930434
http://dx.doi.org/10.1186/s13104-021-05881-5
_version_ 1784618046403379200
author Dewanggana, Marta Nisita
Waturangi, Diana Elizabeth
Yogiara
author_facet Dewanggana, Marta Nisita
Waturangi, Diana Elizabeth
Yogiara
author_sort Dewanggana, Marta Nisita
collection PubMed
description OBJECTIVE: The aims of this research were to determine the genomic properties of BI-EHEC to control Enterohemorrhagic Escherichia coli (EHEC), which was isolated from previous study. Genomic analysis of this phage is essential for the assessment of this bacteriophage for further application as food preservatives. RESULTS: Genome of BI-EHEC was successfully annotated using multiPhATE2. Structural and lytic cycle-related proteins such as head, tail, capsid, and lysozyme (lysin) were annotated. The phylogenetic tree of tail fiber protein and BRIG results showed that BI-EHEC was similar to phages of the same host in the bacteriophage genome database. There were no indications of virulence properties, antibiotic resistance genes and lysogenic protein among annotated genes which implied BI-EHEC followed a lytic life cycle. PHACTS analysis was done to confirm this notion further and yielded a lytic cycle result. Further analysis using CARD found that BI-EHEC does not contain residual ARGs per recommended parameter. Furthermore, BI-EHEC confirmed as lytic bacteriophage, making it a good candidate for biocontrol agent. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05881-5.
format Online
Article
Text
id pubmed-8686590
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-86865902021-12-20 Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli Dewanggana, Marta Nisita Waturangi, Diana Elizabeth Yogiara BMC Res Notes Research Note OBJECTIVE: The aims of this research were to determine the genomic properties of BI-EHEC to control Enterohemorrhagic Escherichia coli (EHEC), which was isolated from previous study. Genomic analysis of this phage is essential for the assessment of this bacteriophage for further application as food preservatives. RESULTS: Genome of BI-EHEC was successfully annotated using multiPhATE2. Structural and lytic cycle-related proteins such as head, tail, capsid, and lysozyme (lysin) were annotated. The phylogenetic tree of tail fiber protein and BRIG results showed that BI-EHEC was similar to phages of the same host in the bacteriophage genome database. There were no indications of virulence properties, antibiotic resistance genes and lysogenic protein among annotated genes which implied BI-EHEC followed a lytic life cycle. PHACTS analysis was done to confirm this notion further and yielded a lytic cycle result. Further analysis using CARD found that BI-EHEC does not contain residual ARGs per recommended parameter. Furthermore, BI-EHEC confirmed as lytic bacteriophage, making it a good candidate for biocontrol agent. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05881-5. BioMed Central 2021-12-20 /pmc/articles/PMC8686590/ /pubmed/34930434 http://dx.doi.org/10.1186/s13104-021-05881-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Dewanggana, Marta Nisita
Waturangi, Diana Elizabeth
Yogiara
Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli
title Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli
title_full Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli
title_fullStr Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli
title_full_unstemmed Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli
title_short Genomic characterization of bacteriophage BI-EHEC infecting strains of Enterohemorrhagic Escherichia coli
title_sort genomic characterization of bacteriophage bi-ehec infecting strains of enterohemorrhagic escherichia coli
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8686590/
https://www.ncbi.nlm.nih.gov/pubmed/34930434
http://dx.doi.org/10.1186/s13104-021-05881-5
work_keys_str_mv AT dewangganamartanisita genomiccharacterizationofbacteriophagebiehecinfectingstrainsofenterohemorrhagicescherichiacoli
AT waturangidianaelizabeth genomiccharacterizationofbacteriophagebiehecinfectingstrainsofenterohemorrhagicescherichiacoli
AT yogiara genomiccharacterizationofbacteriophagebiehecinfectingstrainsofenterohemorrhagicescherichiacoli