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Dependence of bacterial growth rate on dynamic temperature changes
Temperature is an important determinant of bacterial growth. While the dependence of bacterial growth on different temperatures has been well studied for many bacterial species, prediction of bacterial growth rate for dynamic temperature changes is relatively unclear. Here, the authors address this...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Institution of Engineering and Technology
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8687403/ https://www.ncbi.nlm.nih.gov/pubmed/32196465 http://dx.doi.org/10.1049/iet-syb.2018.5125 |
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author | Dey, Abhishek Bokka, Venkat Sen, Shaunak |
author_facet | Dey, Abhishek Bokka, Venkat Sen, Shaunak |
author_sort | Dey, Abhishek |
collection | PubMed |
description | Temperature is an important determinant of bacterial growth. While the dependence of bacterial growth on different temperatures has been well studied for many bacterial species, prediction of bacterial growth rate for dynamic temperature changes is relatively unclear. Here, the authors address this issue using a combination of experimental measurements of the growth, at the resolution of 5 min, of Escherichia coli and mathematical models. They measure growth curves at different temperatures and estimate model parameters to predict bacterial growth profiles subject to dynamic temperature changes. They compared these predicted growth profiles for various step‐like temperature changes with experimental measurements using the coefficient of determination and mean square error and based on this comparison, ranked the different growth models, finding that the generalised logistic growth model gave the smallest error. They note that as the maximum specific growth increases the duration of this growth predominantly decreases. These results provide a basis to compute the dependence of the growth rate parameter in biomolecular circuits on dynamic temperatures and may be useful for designing biomolecular circuits that are robust to temperature. |
format | Online Article Text |
id | pubmed-8687403 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Institution of Engineering and Technology |
record_format | MEDLINE/PubMed |
spelling | pubmed-86874032022-02-16 Dependence of bacterial growth rate on dynamic temperature changes Dey, Abhishek Bokka, Venkat Sen, Shaunak IET Syst Biol Research Article Temperature is an important determinant of bacterial growth. While the dependence of bacterial growth on different temperatures has been well studied for many bacterial species, prediction of bacterial growth rate for dynamic temperature changes is relatively unclear. Here, the authors address this issue using a combination of experimental measurements of the growth, at the resolution of 5 min, of Escherichia coli and mathematical models. They measure growth curves at different temperatures and estimate model parameters to predict bacterial growth profiles subject to dynamic temperature changes. They compared these predicted growth profiles for various step‐like temperature changes with experimental measurements using the coefficient of determination and mean square error and based on this comparison, ranked the different growth models, finding that the generalised logistic growth model gave the smallest error. They note that as the maximum specific growth increases the duration of this growth predominantly decreases. These results provide a basis to compute the dependence of the growth rate parameter in biomolecular circuits on dynamic temperatures and may be useful for designing biomolecular circuits that are robust to temperature. The Institution of Engineering and Technology 2020-04-01 /pmc/articles/PMC8687403/ /pubmed/32196465 http://dx.doi.org/10.1049/iet-syb.2018.5125 Text en © 2020 The Institution of Engineering and Technology https://creativecommons.org/licenses/by-nc-nd/3.0/This is an open access article published by the IET under the Creative Commons Attribution‐NonCommercial‐NoDerivs License (http://creativecommons.org/licenses/by-nc-nd/3.0/ (https://creativecommons.org/licenses/by-nc-nd/3.0/) ) |
spellingShingle | Research Article Dey, Abhishek Bokka, Venkat Sen, Shaunak Dependence of bacterial growth rate on dynamic temperature changes |
title | Dependence of bacterial growth rate on dynamic temperature changes |
title_full | Dependence of bacterial growth rate on dynamic temperature changes |
title_fullStr | Dependence of bacterial growth rate on dynamic temperature changes |
title_full_unstemmed | Dependence of bacterial growth rate on dynamic temperature changes |
title_short | Dependence of bacterial growth rate on dynamic temperature changes |
title_sort | dependence of bacterial growth rate on dynamic temperature changes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8687403/ https://www.ncbi.nlm.nih.gov/pubmed/32196465 http://dx.doi.org/10.1049/iet-syb.2018.5125 |
work_keys_str_mv | AT deyabhishek dependenceofbacterialgrowthrateondynamictemperaturechanges AT bokkavenkat dependenceofbacterialgrowthrateondynamictemperaturechanges AT senshaunak dependenceofbacterialgrowthrateondynamictemperaturechanges |