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Dependence of bacterial growth rate on dynamic temperature changes

Temperature is an important determinant of bacterial growth. While the dependence of bacterial growth on different temperatures has been well studied for many bacterial species, prediction of bacterial growth rate for dynamic temperature changes is relatively unclear. Here, the authors address this...

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Detalles Bibliográficos
Autores principales: Dey, Abhishek, Bokka, Venkat, Sen, Shaunak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Institution of Engineering and Technology 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8687403/
https://www.ncbi.nlm.nih.gov/pubmed/32196465
http://dx.doi.org/10.1049/iet-syb.2018.5125
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author Dey, Abhishek
Bokka, Venkat
Sen, Shaunak
author_facet Dey, Abhishek
Bokka, Venkat
Sen, Shaunak
author_sort Dey, Abhishek
collection PubMed
description Temperature is an important determinant of bacterial growth. While the dependence of bacterial growth on different temperatures has been well studied for many bacterial species, prediction of bacterial growth rate for dynamic temperature changes is relatively unclear. Here, the authors address this issue using a combination of experimental measurements of the growth, at the resolution of 5 min, of Escherichia coli and mathematical models. They measure growth curves at different temperatures and estimate model parameters to predict bacterial growth profiles subject to dynamic temperature changes. They compared these predicted growth profiles for various step‐like temperature changes with experimental measurements using the coefficient of determination and mean square error and based on this comparison, ranked the different growth models, finding that the generalised logistic growth model gave the smallest error. They note that as the maximum specific growth increases the duration of this growth predominantly decreases. These results provide a basis to compute the dependence of the growth rate parameter in biomolecular circuits on dynamic temperatures and may be useful for designing biomolecular circuits that are robust to temperature.
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spelling pubmed-86874032022-02-16 Dependence of bacterial growth rate on dynamic temperature changes Dey, Abhishek Bokka, Venkat Sen, Shaunak IET Syst Biol Research Article Temperature is an important determinant of bacterial growth. While the dependence of bacterial growth on different temperatures has been well studied for many bacterial species, prediction of bacterial growth rate for dynamic temperature changes is relatively unclear. Here, the authors address this issue using a combination of experimental measurements of the growth, at the resolution of 5 min, of Escherichia coli and mathematical models. They measure growth curves at different temperatures and estimate model parameters to predict bacterial growth profiles subject to dynamic temperature changes. They compared these predicted growth profiles for various step‐like temperature changes with experimental measurements using the coefficient of determination and mean square error and based on this comparison, ranked the different growth models, finding that the generalised logistic growth model gave the smallest error. They note that as the maximum specific growth increases the duration of this growth predominantly decreases. These results provide a basis to compute the dependence of the growth rate parameter in biomolecular circuits on dynamic temperatures and may be useful for designing biomolecular circuits that are robust to temperature. The Institution of Engineering and Technology 2020-04-01 /pmc/articles/PMC8687403/ /pubmed/32196465 http://dx.doi.org/10.1049/iet-syb.2018.5125 Text en © 2020 The Institution of Engineering and Technology https://creativecommons.org/licenses/by-nc-nd/3.0/This is an open access article published by the IET under the Creative Commons Attribution‐NonCommercial‐NoDerivs License (http://creativecommons.org/licenses/by-nc-nd/3.0/ (https://creativecommons.org/licenses/by-nc-nd/3.0/) )
spellingShingle Research Article
Dey, Abhishek
Bokka, Venkat
Sen, Shaunak
Dependence of bacterial growth rate on dynamic temperature changes
title Dependence of bacterial growth rate on dynamic temperature changes
title_full Dependence of bacterial growth rate on dynamic temperature changes
title_fullStr Dependence of bacterial growth rate on dynamic temperature changes
title_full_unstemmed Dependence of bacterial growth rate on dynamic temperature changes
title_short Dependence of bacterial growth rate on dynamic temperature changes
title_sort dependence of bacterial growth rate on dynamic temperature changes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8687403/
https://www.ncbi.nlm.nih.gov/pubmed/32196465
http://dx.doi.org/10.1049/iet-syb.2018.5125
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