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The fungal literature-based occurrence database for southern West Siberia (Russia)

BACKGROUND: The paper presents the initiative on literature-based occurrence data mobilisation of fungi and fungi-related organisms (literature-based occurrences, Darwin Core MaterialCitation) to develop the Fungal literature-based occurrence database for the southern West Siberia (FuSWS). The initi...

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Autores principales: Filippova, Nina, Ageev, Dmitry, Bolshakov, Sergey, Davydov, Evgeny A., Filippova, Aleksandra, Filippov, Ilya, Gashkov, Sergei, Gorbunova, Irina, Kalinina, Ludmila, Kudashova, Nadezhda, Palomozhnykh, Ekaterina, Shabanova, Natalia, Tomoshevich, Maria, Vayshlya, Olga, Vlasenko, Anastasia, Vlasenko, Vyacheslav, Vorob'eva, Irina, Yakovchenko, Lidia, Zvyagina, Elena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688407/
https://www.ncbi.nlm.nih.gov/pubmed/34938144
http://dx.doi.org/10.3897/BDJ.9.e76789
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author Filippova, Nina
Ageev, Dmitry
Bolshakov, Sergey
Davydov, Evgeny A.
Filippova, Aleksandra
Filippov, Ilya
Gashkov, Sergei
Gorbunova, Irina
Kalinina, Ludmila
Kudashova, Nadezhda
Palomozhnykh, Ekaterina
Shabanova, Natalia
Tomoshevich, Maria
Vayshlya, Olga
Vlasenko, Anastasia
Vlasenko, Vyacheslav
Vorob'eva, Irina
Yakovchenko, Lidia
Zvyagina, Elena
author_facet Filippova, Nina
Ageev, Dmitry
Bolshakov, Sergey
Davydov, Evgeny A.
Filippova, Aleksandra
Filippov, Ilya
Gashkov, Sergei
Gorbunova, Irina
Kalinina, Ludmila
Kudashova, Nadezhda
Palomozhnykh, Ekaterina
Shabanova, Natalia
Tomoshevich, Maria
Vayshlya, Olga
Vlasenko, Anastasia
Vlasenko, Vyacheslav
Vorob'eva, Irina
Yakovchenko, Lidia
Zvyagina, Elena
author_sort Filippova, Nina
collection PubMed
description BACKGROUND: The paper presents the initiative on literature-based occurrence data mobilisation of fungi and fungi-related organisms (literature-based occurrences, Darwin Core MaterialCitation) to develop the Fungal literature-based occurrence database for the southern West Siberia (FuSWS). The initiative on mobilisation of literature-based occurrence data started in the northern part of West Siberia in 2016. The present project extends the initiative to the southern regions and includes ten administrative territories (Tyumen Region, Sverdlovsk Region, Chelyabinsk Region, Omsk Region, Kurgan Region, Tomsk Region, Novosibirsk Region, Kemerovo Region, Altai Territory and Republic of Altai). The area occupies the central to southern part of the West Siberian Plain and extends for about 1.5 K km from the west to the east from the eastern slopes of the Ural Mountains to Yenisey River and from north to south—about 1.3 K km. The total area equals about 1.4 million km(2). The initiative is actively growing in spatial, collaboration and data accumulation terms. The working group of about 30 mycologists from eight organisations dedicated to the data mobilisation was created as part of the Siberian Mycological Society (informal organisation since 2019). They have compiled the almost complete bibliographic list of mycology-related papers for the southern West Siberia, including over 900 publications for the last two centuries (the earliest dated 1800). All literature sources were digitised and an online library was created to integrate bibliography metadata and digitised papers using Zotero bibliography manager. The analysis of published sources showed that about two-thirds of works contain occurrences of fungi for the scope of mobilisation. At the time of the paper submission, the database had been populated with a total of about 8 K records from 93 sources. The dataset is uploaded to GBIF, where it is available for online search of species occurrences and/or download. The project's page with the introduction, templates, bibliography list, video-presentations and written instructions is available (in Russian) at the web site of the Siberian Mycological Society. The initiative will be continued in the following years to extract the records from all published sources. NEW INFORMATION: The paper presents the first project with the aim of literature-based occurrence data mobilisation of fungi and fungi-related organisms in the southern West Siberia. The full bibliography and a digital library of all regional mycological publications created for the first time includes about 900 published works. By the time of paper submission, nearly 8 K occurrence records were extracted from about 90 literature sources and integrated into the FuSWS database published in GBIF.
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spelling pubmed-86884072021-12-21 The fungal literature-based occurrence database for southern West Siberia (Russia) Filippova, Nina Ageev, Dmitry Bolshakov, Sergey Davydov, Evgeny A. Filippova, Aleksandra Filippov, Ilya Gashkov, Sergei Gorbunova, Irina Kalinina, Ludmila Kudashova, Nadezhda Palomozhnykh, Ekaterina Shabanova, Natalia Tomoshevich, Maria Vayshlya, Olga Vlasenko, Anastasia Vlasenko, Vyacheslav Vorob'eva, Irina Yakovchenko, Lidia Zvyagina, Elena Biodivers Data J Data Paper (Biosciences) BACKGROUND: The paper presents the initiative on literature-based occurrence data mobilisation of fungi and fungi-related organisms (literature-based occurrences, Darwin Core MaterialCitation) to develop the Fungal literature-based occurrence database for the southern West Siberia (FuSWS). The initiative on mobilisation of literature-based occurrence data started in the northern part of West Siberia in 2016. The present project extends the initiative to the southern regions and includes ten administrative territories (Tyumen Region, Sverdlovsk Region, Chelyabinsk Region, Omsk Region, Kurgan Region, Tomsk Region, Novosibirsk Region, Kemerovo Region, Altai Territory and Republic of Altai). The area occupies the central to southern part of the West Siberian Plain and extends for about 1.5 K km from the west to the east from the eastern slopes of the Ural Mountains to Yenisey River and from north to south—about 1.3 K km. The total area equals about 1.4 million km(2). The initiative is actively growing in spatial, collaboration and data accumulation terms. The working group of about 30 mycologists from eight organisations dedicated to the data mobilisation was created as part of the Siberian Mycological Society (informal organisation since 2019). They have compiled the almost complete bibliographic list of mycology-related papers for the southern West Siberia, including over 900 publications for the last two centuries (the earliest dated 1800). All literature sources were digitised and an online library was created to integrate bibliography metadata and digitised papers using Zotero bibliography manager. The analysis of published sources showed that about two-thirds of works contain occurrences of fungi for the scope of mobilisation. At the time of the paper submission, the database had been populated with a total of about 8 K records from 93 sources. The dataset is uploaded to GBIF, where it is available for online search of species occurrences and/or download. The project's page with the introduction, templates, bibliography list, video-presentations and written instructions is available (in Russian) at the web site of the Siberian Mycological Society. The initiative will be continued in the following years to extract the records from all published sources. NEW INFORMATION: The paper presents the first project with the aim of literature-based occurrence data mobilisation of fungi and fungi-related organisms in the southern West Siberia. The full bibliography and a digital library of all regional mycological publications created for the first time includes about 900 published works. By the time of paper submission, nearly 8 K occurrence records were extracted from about 90 literature sources and integrated into the FuSWS database published in GBIF. Pensoft Publishers 2021-12-13 /pmc/articles/PMC8688407/ /pubmed/34938144 http://dx.doi.org/10.3897/BDJ.9.e76789 Text en Nina Filippova, Dmitry Ageev, Sergey Bolshakov, Evgeny A. Davydov, Aleksandra Filippova, Ilya Filippov, Sergei Gashkov, Irina Gorbunova, Ludmila Kalinina, Nadezhda Kudashova, Ekaterina Palomozhnykh, Natalia Shabanova, Maria Tomoshevich, Olga Vayshlya, Anastasia Vlasenko, Vyacheslav Vlasenko, Irina Vorob'eva, Lidia Yakovchenko, Elena Zvyagina https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Data Paper (Biosciences)
Filippova, Nina
Ageev, Dmitry
Bolshakov, Sergey
Davydov, Evgeny A.
Filippova, Aleksandra
Filippov, Ilya
Gashkov, Sergei
Gorbunova, Irina
Kalinina, Ludmila
Kudashova, Nadezhda
Palomozhnykh, Ekaterina
Shabanova, Natalia
Tomoshevich, Maria
Vayshlya, Olga
Vlasenko, Anastasia
Vlasenko, Vyacheslav
Vorob'eva, Irina
Yakovchenko, Lidia
Zvyagina, Elena
The fungal literature-based occurrence database for southern West Siberia (Russia)
title The fungal literature-based occurrence database for southern West Siberia (Russia)
title_full The fungal literature-based occurrence database for southern West Siberia (Russia)
title_fullStr The fungal literature-based occurrence database for southern West Siberia (Russia)
title_full_unstemmed The fungal literature-based occurrence database for southern West Siberia (Russia)
title_short The fungal literature-based occurrence database for southern West Siberia (Russia)
title_sort fungal literature-based occurrence database for southern west siberia (russia)
topic Data Paper (Biosciences)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688407/
https://www.ncbi.nlm.nih.gov/pubmed/34938144
http://dx.doi.org/10.3897/BDJ.9.e76789
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