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Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer
Gastric cancer (GC) is rampant around the world. Most of the GC cases are detected in advanced stages with poor prognosis. The identification of marker genes for early diagnosis is of great significance. Studying the tumor environment is helpful to acknowledge the process of tumorigenesis, developme...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688826/ https://www.ncbi.nlm.nih.gov/pubmed/34950700 http://dx.doi.org/10.3389/fmolb.2021.756085 |
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author | Chen, Haiyan Sun, Qi Zhang, Cangang She, Junjun Cao, Shuai Cao, Meng Zhang, Nana Adiila, Ayarick Vivian Zhong, Jinjin Yao, Chengyun Wang, Yili Xia, Hongping Lan, Linhua |
author_facet | Chen, Haiyan Sun, Qi Zhang, Cangang She, Junjun Cao, Shuai Cao, Meng Zhang, Nana Adiila, Ayarick Vivian Zhong, Jinjin Yao, Chengyun Wang, Yili Xia, Hongping Lan, Linhua |
author_sort | Chen, Haiyan |
collection | PubMed |
description | Gastric cancer (GC) is rampant around the world. Most of the GC cases are detected in advanced stages with poor prognosis. The identification of marker genes for early diagnosis is of great significance. Studying the tumor environment is helpful to acknowledge the process of tumorigenesis, development, and metastasis. Twenty-two kinds of immune cells were calculated by CIBERSORT from Gene Expression Omnibus (GEO) database. Subsequently, higher infiltration of macrophages M0 was discovered in GC compared with normal tissues. WGCNA was utilized to construct the network and then identify key modules and genes related to macrophages in TCGA. Finally, 18 hub genes were verified. In the PPI bar chart, the top 3 genes were chosen as hub genes involved in most pathways. On the TIMER and THPA websites, it is verified that the expression levels of CYBB, CD86, and C3AR1 genes in tumor tissues were higher than those in normal tissues. These genes may work as biomarkers or targets for accurate diagnosis and treatment of GC in the future. Our findings may be a new strategy for the treatment of GC. |
format | Online Article Text |
id | pubmed-8688826 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86888262021-12-22 Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer Chen, Haiyan Sun, Qi Zhang, Cangang She, Junjun Cao, Shuai Cao, Meng Zhang, Nana Adiila, Ayarick Vivian Zhong, Jinjin Yao, Chengyun Wang, Yili Xia, Hongping Lan, Linhua Front Mol Biosci Molecular Biosciences Gastric cancer (GC) is rampant around the world. Most of the GC cases are detected in advanced stages with poor prognosis. The identification of marker genes for early diagnosis is of great significance. Studying the tumor environment is helpful to acknowledge the process of tumorigenesis, development, and metastasis. Twenty-two kinds of immune cells were calculated by CIBERSORT from Gene Expression Omnibus (GEO) database. Subsequently, higher infiltration of macrophages M0 was discovered in GC compared with normal tissues. WGCNA was utilized to construct the network and then identify key modules and genes related to macrophages in TCGA. Finally, 18 hub genes were verified. In the PPI bar chart, the top 3 genes were chosen as hub genes involved in most pathways. On the TIMER and THPA websites, it is verified that the expression levels of CYBB, CD86, and C3AR1 genes in tumor tissues were higher than those in normal tissues. These genes may work as biomarkers or targets for accurate diagnosis and treatment of GC in the future. Our findings may be a new strategy for the treatment of GC. Frontiers Media S.A. 2021-12-07 /pmc/articles/PMC8688826/ /pubmed/34950700 http://dx.doi.org/10.3389/fmolb.2021.756085 Text en Copyright © 2021 Chen, Sun, Zhang, She, Cao, Cao, Zhang, Adiila, Zhong, Yao, Wang, Xia and Lan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Chen, Haiyan Sun, Qi Zhang, Cangang She, Junjun Cao, Shuai Cao, Meng Zhang, Nana Adiila, Ayarick Vivian Zhong, Jinjin Yao, Chengyun Wang, Yili Xia, Hongping Lan, Linhua Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer |
title | Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer |
title_full | Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer |
title_fullStr | Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer |
title_full_unstemmed | Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer |
title_short | Identification and Validation of CYBB, CD86, and C3AR1 as the Key Genes Related to Macrophage Infiltration of Gastric Cancer |
title_sort | identification and validation of cybb, cd86, and c3ar1 as the key genes related to macrophage infiltration of gastric cancer |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688826/ https://www.ncbi.nlm.nih.gov/pubmed/34950700 http://dx.doi.org/10.3389/fmolb.2021.756085 |
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