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Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
Glioblastoma multiforme persists to be an enigmatic distress in neuro-oncology. Its untethering capacity to thrive in a confined microenvironment, metastasize intracranially, and remain resistant to the systemic treatments, renders this tumour incurable. The glial cell type specificity in GBM remain...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688884/ https://www.ncbi.nlm.nih.gov/pubmed/34976314 http://dx.doi.org/10.1016/j.csbj.2021.12.010 |
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author | Fathima, Samreen Sinha, Swati Donakonda, Sainitin |
author_facet | Fathima, Samreen Sinha, Swati Donakonda, Sainitin |
author_sort | Fathima, Samreen |
collection | PubMed |
description | Glioblastoma multiforme persists to be an enigmatic distress in neuro-oncology. Its untethering capacity to thrive in a confined microenvironment, metastasize intracranially, and remain resistant to the systemic treatments, renders this tumour incurable. The glial cell type specificity in GBM remains exploratory. In our study, we aimed to address this problem by studying the GBM at the cell type level in the brain. The cellular makeup of this tumour is composed of genetically altered glial cells which include astrocyte, microglia, oligodendrocyte precursor cell, newly formed oligodendrocyte and myelinating oligodendrocyte. We extracted cell type-specific solid tumour as well as recurrent solid tumour glioma genes, and studied their functional networks and contribution towards gliomagenesis. We identified the principal transcription factors that are found to be regulating vital tumorigenic processes. We also assessed the protein–protein interaction networks at their domain level to get a more microscopic view of the structural and functional operations that transpire in these cells. This yielded the eminent protein regulators exhibiting their regulation in signaling pathways. Overall, our study unveiled regulatory mechanisms in glioma cell types that can be targeted for a more efficient glioma therapy. |
format | Online Article Text |
id | pubmed-8688884 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-86888842021-12-30 Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme Fathima, Samreen Sinha, Swati Donakonda, Sainitin Comput Struct Biotechnol J Research Article Glioblastoma multiforme persists to be an enigmatic distress in neuro-oncology. Its untethering capacity to thrive in a confined microenvironment, metastasize intracranially, and remain resistant to the systemic treatments, renders this tumour incurable. The glial cell type specificity in GBM remains exploratory. In our study, we aimed to address this problem by studying the GBM at the cell type level in the brain. The cellular makeup of this tumour is composed of genetically altered glial cells which include astrocyte, microglia, oligodendrocyte precursor cell, newly formed oligodendrocyte and myelinating oligodendrocyte. We extracted cell type-specific solid tumour as well as recurrent solid tumour glioma genes, and studied their functional networks and contribution towards gliomagenesis. We identified the principal transcription factors that are found to be regulating vital tumorigenic processes. We also assessed the protein–protein interaction networks at their domain level to get a more microscopic view of the structural and functional operations that transpire in these cells. This yielded the eminent protein regulators exhibiting their regulation in signaling pathways. Overall, our study unveiled regulatory mechanisms in glioma cell types that can be targeted for a more efficient glioma therapy. Research Network of Computational and Structural Biotechnology 2021-12-09 /pmc/articles/PMC8688884/ /pubmed/34976314 http://dx.doi.org/10.1016/j.csbj.2021.12.010 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Research Article Fathima, Samreen Sinha, Swati Donakonda, Sainitin Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme |
title | Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme |
title_full | Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme |
title_fullStr | Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme |
title_full_unstemmed | Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme |
title_short | Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme |
title_sort | unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688884/ https://www.ncbi.nlm.nih.gov/pubmed/34976314 http://dx.doi.org/10.1016/j.csbj.2021.12.010 |
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