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Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme

Glioblastoma multiforme persists to be an enigmatic distress in neuro-oncology. Its untethering capacity to thrive in a confined microenvironment, metastasize intracranially, and remain resistant to the systemic treatments, renders this tumour incurable. The glial cell type specificity in GBM remain...

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Detalles Bibliográficos
Autores principales: Fathima, Samreen, Sinha, Swati, Donakonda, Sainitin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688884/
https://www.ncbi.nlm.nih.gov/pubmed/34976314
http://dx.doi.org/10.1016/j.csbj.2021.12.010
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author Fathima, Samreen
Sinha, Swati
Donakonda, Sainitin
author_facet Fathima, Samreen
Sinha, Swati
Donakonda, Sainitin
author_sort Fathima, Samreen
collection PubMed
description Glioblastoma multiforme persists to be an enigmatic distress in neuro-oncology. Its untethering capacity to thrive in a confined microenvironment, metastasize intracranially, and remain resistant to the systemic treatments, renders this tumour incurable. The glial cell type specificity in GBM remains exploratory. In our study, we aimed to address this problem by studying the GBM at the cell type level in the brain. The cellular makeup of this tumour is composed of genetically altered glial cells which include astrocyte, microglia, oligodendrocyte precursor cell, newly formed oligodendrocyte and myelinating oligodendrocyte. We extracted cell type-specific solid tumour as well as recurrent solid tumour glioma genes, and studied their functional networks and contribution towards gliomagenesis. We identified the principal transcription factors that are found to be regulating vital tumorigenic processes. We also assessed the protein–protein interaction networks at their domain level to get a more microscopic view of the structural and functional operations that transpire in these cells. This yielded the eminent protein regulators exhibiting their regulation in signaling pathways. Overall, our study unveiled regulatory mechanisms in glioma cell types that can be targeted for a more efficient glioma therapy.
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spelling pubmed-86888842021-12-30 Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme Fathima, Samreen Sinha, Swati Donakonda, Sainitin Comput Struct Biotechnol J Research Article Glioblastoma multiforme persists to be an enigmatic distress in neuro-oncology. Its untethering capacity to thrive in a confined microenvironment, metastasize intracranially, and remain resistant to the systemic treatments, renders this tumour incurable. The glial cell type specificity in GBM remains exploratory. In our study, we aimed to address this problem by studying the GBM at the cell type level in the brain. The cellular makeup of this tumour is composed of genetically altered glial cells which include astrocyte, microglia, oligodendrocyte precursor cell, newly formed oligodendrocyte and myelinating oligodendrocyte. We extracted cell type-specific solid tumour as well as recurrent solid tumour glioma genes, and studied their functional networks and contribution towards gliomagenesis. We identified the principal transcription factors that are found to be regulating vital tumorigenic processes. We also assessed the protein–protein interaction networks at their domain level to get a more microscopic view of the structural and functional operations that transpire in these cells. This yielded the eminent protein regulators exhibiting their regulation in signaling pathways. Overall, our study unveiled regulatory mechanisms in glioma cell types that can be targeted for a more efficient glioma therapy. Research Network of Computational and Structural Biotechnology 2021-12-09 /pmc/articles/PMC8688884/ /pubmed/34976314 http://dx.doi.org/10.1016/j.csbj.2021.12.010 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Fathima, Samreen
Sinha, Swati
Donakonda, Sainitin
Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
title Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
title_full Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
title_fullStr Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
title_full_unstemmed Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
title_short Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
title_sort unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8688884/
https://www.ncbi.nlm.nih.gov/pubmed/34976314
http://dx.doi.org/10.1016/j.csbj.2021.12.010
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