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Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries

[Image: see text] Standardisation of genetic parts has become a topic of increasing interest over the last decades. The promise of simplifying molecular cloning procedures, while at the same time making them more predictable and reproducible has led to the design of several biological standards, one...

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Autores principales: Otto, Maximilian, Skrekas, Christos, Gossing, Michael, Gustafsson, Johan, Siewers, Verena, David, Florian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689691/
https://www.ncbi.nlm.nih.gov/pubmed/34860007
http://dx.doi.org/10.1021/acssynbio.1c00408
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author Otto, Maximilian
Skrekas, Christos
Gossing, Michael
Gustafsson, Johan
Siewers, Verena
David, Florian
author_facet Otto, Maximilian
Skrekas, Christos
Gossing, Michael
Gustafsson, Johan
Siewers, Verena
David, Florian
author_sort Otto, Maximilian
collection PubMed
description [Image: see text] Standardisation of genetic parts has become a topic of increasing interest over the last decades. The promise of simplifying molecular cloning procedures, while at the same time making them more predictable and reproducible has led to the design of several biological standards, one of which is modular cloning (MoClo). The Yeast MoClo toolkit provides a large library of characterised genetic parts combined with a comprehensive and flexible assembly strategy. Here we aimed to (1) simplify the adoption of the standard by providing a simple design tool for including new parts in the MoClo library, (2) characterise the toolkit further by demonstrating the impact of a BglII site in promoter parts on protein expression, and (3) expand the toolkit to enable efficient construction of gRNA arrays, marker-less integration cassettes and combinatorial libraries. These additions make the toolkit more applicable for common engineering tasks and will further promote its adoption in the yeast biological engineering community.
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spelling pubmed-86896912021-12-22 Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries Otto, Maximilian Skrekas, Christos Gossing, Michael Gustafsson, Johan Siewers, Verena David, Florian ACS Synth Biol [Image: see text] Standardisation of genetic parts has become a topic of increasing interest over the last decades. The promise of simplifying molecular cloning procedures, while at the same time making them more predictable and reproducible has led to the design of several biological standards, one of which is modular cloning (MoClo). The Yeast MoClo toolkit provides a large library of characterised genetic parts combined with a comprehensive and flexible assembly strategy. Here we aimed to (1) simplify the adoption of the standard by providing a simple design tool for including new parts in the MoClo library, (2) characterise the toolkit further by demonstrating the impact of a BglII site in promoter parts on protein expression, and (3) expand the toolkit to enable efficient construction of gRNA arrays, marker-less integration cassettes and combinatorial libraries. These additions make the toolkit more applicable for common engineering tasks and will further promote its adoption in the yeast biological engineering community. American Chemical Society 2021-12-03 2021-12-17 /pmc/articles/PMC8689691/ /pubmed/34860007 http://dx.doi.org/10.1021/acssynbio.1c00408 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Otto, Maximilian
Skrekas, Christos
Gossing, Michael
Gustafsson, Johan
Siewers, Verena
David, Florian
Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries
title Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries
title_full Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries
title_fullStr Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries
title_full_unstemmed Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries
title_short Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries
title_sort expansion of the yeast modular cloning toolkit for crispr-based applications, genomic integrations and combinatorial libraries
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689691/
https://www.ncbi.nlm.nih.gov/pubmed/34860007
http://dx.doi.org/10.1021/acssynbio.1c00408
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