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Complex Portal 2022: new curation frontiers

The Complex Portal (www.ebi.ac.uk/complexportal) is a manually curated, encyclopaedic database of macromolecular complexes with known function from a range of model organisms. It summarizes complex composition, topology and function along with links to a large range of domain-specific resources (i.e...

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Autores principales: Meldal, Birgit H M, Perfetto, Livia, Combe, Colin, Lubiana, Tiago, Ferreira Cavalcante, João Vitor, Bye-A-Jee, Hema, Waagmeester, Andra, del-Toro, Noemi, Shrivastava, Anjali, Barrera, Elisabeth, Wong, Edith, Mlecnik, Bernhard, Bindea, Gabriela, Panneerselvam, Kalpana, Willighagen, Egon, Rappsilber, Juri, Porras, Pablo, Hermjakob, Henning, Orchard, Sandra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689886/
https://www.ncbi.nlm.nih.gov/pubmed/34718729
http://dx.doi.org/10.1093/nar/gkab991
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author Meldal, Birgit H M
Perfetto, Livia
Combe, Colin
Lubiana, Tiago
Ferreira Cavalcante, João Vitor
Bye-A-Jee, Hema
Waagmeester, Andra
del-Toro, Noemi
Shrivastava, Anjali
Barrera, Elisabeth
Wong, Edith
Mlecnik, Bernhard
Bindea, Gabriela
Panneerselvam, Kalpana
Willighagen, Egon
Rappsilber, Juri
Porras, Pablo
Hermjakob, Henning
Orchard, Sandra
author_facet Meldal, Birgit H M
Perfetto, Livia
Combe, Colin
Lubiana, Tiago
Ferreira Cavalcante, João Vitor
Bye-A-Jee, Hema
Waagmeester, Andra
del-Toro, Noemi
Shrivastava, Anjali
Barrera, Elisabeth
Wong, Edith
Mlecnik, Bernhard
Bindea, Gabriela
Panneerselvam, Kalpana
Willighagen, Egon
Rappsilber, Juri
Porras, Pablo
Hermjakob, Henning
Orchard, Sandra
author_sort Meldal, Birgit H M
collection PubMed
description The Complex Portal (www.ebi.ac.uk/complexportal) is a manually curated, encyclopaedic database of macromolecular complexes with known function from a range of model organisms. It summarizes complex composition, topology and function along with links to a large range of domain-specific resources (i.e. wwPDB, EMDB and Reactome). Since the last update in 2019, we have produced a first draft complexome for Escherichia coli, maintained and updated that of Saccharomyces cerevisiae, added over 40 coronavirus complexes and increased the human complexome to over 1100 complexes that include approximately 200 complexes that act as targets for viral proteins or are part of the immune system. The display of protein features in ComplexViewer has been improved and the participant table is now colour-coordinated with the nodes in ComplexViewer. Community collaboration has expanded, for example by contributing to an analysis of putative transcription cofactors and providing data accessible to semantic web tools through Wikidata which is now populated with manually curated Complex Portal content through a new bot. Our data license is now CC0 to encourage data reuse. Users are encouraged to get in touch, provide us with feedback and send curation requests through the ‘Support’ link.
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spelling pubmed-86898862022-01-05 Complex Portal 2022: new curation frontiers Meldal, Birgit H M Perfetto, Livia Combe, Colin Lubiana, Tiago Ferreira Cavalcante, João Vitor Bye-A-Jee, Hema Waagmeester, Andra del-Toro, Noemi Shrivastava, Anjali Barrera, Elisabeth Wong, Edith Mlecnik, Bernhard Bindea, Gabriela Panneerselvam, Kalpana Willighagen, Egon Rappsilber, Juri Porras, Pablo Hermjakob, Henning Orchard, Sandra Nucleic Acids Res Database Issue The Complex Portal (www.ebi.ac.uk/complexportal) is a manually curated, encyclopaedic database of macromolecular complexes with known function from a range of model organisms. It summarizes complex composition, topology and function along with links to a large range of domain-specific resources (i.e. wwPDB, EMDB and Reactome). Since the last update in 2019, we have produced a first draft complexome for Escherichia coli, maintained and updated that of Saccharomyces cerevisiae, added over 40 coronavirus complexes and increased the human complexome to over 1100 complexes that include approximately 200 complexes that act as targets for viral proteins or are part of the immune system. The display of protein features in ComplexViewer has been improved and the participant table is now colour-coordinated with the nodes in ComplexViewer. Community collaboration has expanded, for example by contributing to an analysis of putative transcription cofactors and providing data accessible to semantic web tools through Wikidata which is now populated with manually curated Complex Portal content through a new bot. Our data license is now CC0 to encourage data reuse. Users are encouraged to get in touch, provide us with feedback and send curation requests through the ‘Support’ link. Oxford University Press 2021-10-29 /pmc/articles/PMC8689886/ /pubmed/34718729 http://dx.doi.org/10.1093/nar/gkab991 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Meldal, Birgit H M
Perfetto, Livia
Combe, Colin
Lubiana, Tiago
Ferreira Cavalcante, João Vitor
Bye-A-Jee, Hema
Waagmeester, Andra
del-Toro, Noemi
Shrivastava, Anjali
Barrera, Elisabeth
Wong, Edith
Mlecnik, Bernhard
Bindea, Gabriela
Panneerselvam, Kalpana
Willighagen, Egon
Rappsilber, Juri
Porras, Pablo
Hermjakob, Henning
Orchard, Sandra
Complex Portal 2022: new curation frontiers
title Complex Portal 2022: new curation frontiers
title_full Complex Portal 2022: new curation frontiers
title_fullStr Complex Portal 2022: new curation frontiers
title_full_unstemmed Complex Portal 2022: new curation frontiers
title_short Complex Portal 2022: new curation frontiers
title_sort complex portal 2022: new curation frontiers
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689886/
https://www.ncbi.nlm.nih.gov/pubmed/34718729
http://dx.doi.org/10.1093/nar/gkab991
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