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DNA Data Bank of Japan (DDBJ) update report 2021

The Bioinformation and DDBJ (DNA Data Bank of Japan) Center (DDBJ Center; https://www.ddbj.nig.ac.jp) operates archival databases that collect nucleotide sequences, study and sample information, and distribute them without access restriction to progress life science research as a member of the Inter...

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Detalles Bibliográficos
Autores principales: Okido, Toshihisa, Kodama, Yuichi, Mashima, Jun, Kosuge, Takehide, Fujisawa, Takatomo, Ogasawara, Osamu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689959/
https://www.ncbi.nlm.nih.gov/pubmed/34751405
http://dx.doi.org/10.1093/nar/gkab995
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author Okido, Toshihisa
Kodama, Yuichi
Mashima, Jun
Kosuge, Takehide
Fujisawa, Takatomo
Ogasawara, Osamu
author_facet Okido, Toshihisa
Kodama, Yuichi
Mashima, Jun
Kosuge, Takehide
Fujisawa, Takatomo
Ogasawara, Osamu
author_sort Okido, Toshihisa
collection PubMed
description The Bioinformation and DDBJ (DNA Data Bank of Japan) Center (DDBJ Center; https://www.ddbj.nig.ac.jp) operates archival databases that collect nucleotide sequences, study and sample information, and distribute them without access restriction to progress life science research as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with the National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute. Besides the INSDC databases, the DDBJ Center also provides the Genomic Expression Archive for functional genomics data and the Japanese Genotype-phenotype Archive for human data requiring controlled access. Additionally, the DDBJ Center started a new public repository, MetaboBank, for experimental raw data and metadata from metabolomics research in October 2020. In response to the COVID-19 pandemic, the DDBJ Center openly shares SARS-CoV-2 genome sequences in collaboration with Shizuoka Prefecture and Keio University. The operation of DDBJ is based on the National Institute of Genetics (NIG) supercomputer, which is open for large-scale sequence data analysis for life science researchers. This paper reports recent updates on the archival databases and the services of DDBJ.
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spelling pubmed-86899592022-01-05 DNA Data Bank of Japan (DDBJ) update report 2021 Okido, Toshihisa Kodama, Yuichi Mashima, Jun Kosuge, Takehide Fujisawa, Takatomo Ogasawara, Osamu Nucleic Acids Res Database Issue The Bioinformation and DDBJ (DNA Data Bank of Japan) Center (DDBJ Center; https://www.ddbj.nig.ac.jp) operates archival databases that collect nucleotide sequences, study and sample information, and distribute them without access restriction to progress life science research as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with the National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute. Besides the INSDC databases, the DDBJ Center also provides the Genomic Expression Archive for functional genomics data and the Japanese Genotype-phenotype Archive for human data requiring controlled access. Additionally, the DDBJ Center started a new public repository, MetaboBank, for experimental raw data and metadata from metabolomics research in October 2020. In response to the COVID-19 pandemic, the DDBJ Center openly shares SARS-CoV-2 genome sequences in collaboration with Shizuoka Prefecture and Keio University. The operation of DDBJ is based on the National Institute of Genetics (NIG) supercomputer, which is open for large-scale sequence data analysis for life science researchers. This paper reports recent updates on the archival databases and the services of DDBJ. Oxford University Press 2021-11-09 /pmc/articles/PMC8689959/ /pubmed/34751405 http://dx.doi.org/10.1093/nar/gkab995 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Okido, Toshihisa
Kodama, Yuichi
Mashima, Jun
Kosuge, Takehide
Fujisawa, Takatomo
Ogasawara, Osamu
DNA Data Bank of Japan (DDBJ) update report 2021
title DNA Data Bank of Japan (DDBJ) update report 2021
title_full DNA Data Bank of Japan (DDBJ) update report 2021
title_fullStr DNA Data Bank of Japan (DDBJ) update report 2021
title_full_unstemmed DNA Data Bank of Japan (DDBJ) update report 2021
title_short DNA Data Bank of Japan (DDBJ) update report 2021
title_sort dna data bank of japan (ddbj) update report 2021
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689959/
https://www.ncbi.nlm.nih.gov/pubmed/34751405
http://dx.doi.org/10.1093/nar/gkab995
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