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DNA Data Bank of Japan (DDBJ) update report 2021
The Bioinformation and DDBJ (DNA Data Bank of Japan) Center (DDBJ Center; https://www.ddbj.nig.ac.jp) operates archival databases that collect nucleotide sequences, study and sample information, and distribute them without access restriction to progress life science research as a member of the Inter...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689959/ https://www.ncbi.nlm.nih.gov/pubmed/34751405 http://dx.doi.org/10.1093/nar/gkab995 |
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author | Okido, Toshihisa Kodama, Yuichi Mashima, Jun Kosuge, Takehide Fujisawa, Takatomo Ogasawara, Osamu |
author_facet | Okido, Toshihisa Kodama, Yuichi Mashima, Jun Kosuge, Takehide Fujisawa, Takatomo Ogasawara, Osamu |
author_sort | Okido, Toshihisa |
collection | PubMed |
description | The Bioinformation and DDBJ (DNA Data Bank of Japan) Center (DDBJ Center; https://www.ddbj.nig.ac.jp) operates archival databases that collect nucleotide sequences, study and sample information, and distribute them without access restriction to progress life science research as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with the National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute. Besides the INSDC databases, the DDBJ Center also provides the Genomic Expression Archive for functional genomics data and the Japanese Genotype-phenotype Archive for human data requiring controlled access. Additionally, the DDBJ Center started a new public repository, MetaboBank, for experimental raw data and metadata from metabolomics research in October 2020. In response to the COVID-19 pandemic, the DDBJ Center openly shares SARS-CoV-2 genome sequences in collaboration with Shizuoka Prefecture and Keio University. The operation of DDBJ is based on the National Institute of Genetics (NIG) supercomputer, which is open for large-scale sequence data analysis for life science researchers. This paper reports recent updates on the archival databases and the services of DDBJ. |
format | Online Article Text |
id | pubmed-8689959 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-86899592022-01-05 DNA Data Bank of Japan (DDBJ) update report 2021 Okido, Toshihisa Kodama, Yuichi Mashima, Jun Kosuge, Takehide Fujisawa, Takatomo Ogasawara, Osamu Nucleic Acids Res Database Issue The Bioinformation and DDBJ (DNA Data Bank of Japan) Center (DDBJ Center; https://www.ddbj.nig.ac.jp) operates archival databases that collect nucleotide sequences, study and sample information, and distribute them without access restriction to progress life science research as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with the National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute. Besides the INSDC databases, the DDBJ Center also provides the Genomic Expression Archive for functional genomics data and the Japanese Genotype-phenotype Archive for human data requiring controlled access. Additionally, the DDBJ Center started a new public repository, MetaboBank, for experimental raw data and metadata from metabolomics research in October 2020. In response to the COVID-19 pandemic, the DDBJ Center openly shares SARS-CoV-2 genome sequences in collaboration with Shizuoka Prefecture and Keio University. The operation of DDBJ is based on the National Institute of Genetics (NIG) supercomputer, which is open for large-scale sequence data analysis for life science researchers. This paper reports recent updates on the archival databases and the services of DDBJ. Oxford University Press 2021-11-09 /pmc/articles/PMC8689959/ /pubmed/34751405 http://dx.doi.org/10.1093/nar/gkab995 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Okido, Toshihisa Kodama, Yuichi Mashima, Jun Kosuge, Takehide Fujisawa, Takatomo Ogasawara, Osamu DNA Data Bank of Japan (DDBJ) update report 2021 |
title | DNA Data Bank of Japan (DDBJ) update report 2021 |
title_full | DNA Data Bank of Japan (DDBJ) update report 2021 |
title_fullStr | DNA Data Bank of Japan (DDBJ) update report 2021 |
title_full_unstemmed | DNA Data Bank of Japan (DDBJ) update report 2021 |
title_short | DNA Data Bank of Japan (DDBJ) update report 2021 |
title_sort | dna data bank of japan (ddbj) update report 2021 |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8689959/ https://www.ncbi.nlm.nih.gov/pubmed/34751405 http://dx.doi.org/10.1093/nar/gkab995 |
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