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Network analytics for drug repurposing in COVID-19

To better understand the potential of drug repurposing in COVID-19, we analyzed control strategies over essential host factors for SARS-CoV-2 infection. We constructed comprehensive directed protein–protein interaction (PPI) networks integrating the top-ranked host factors, the drug target proteins...

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Autores principales: Siminea, Nicoleta, Popescu, Victor, Sanchez Martin, Jose Angel, Florea, Daniela, Gavril, Georgiana, Gheorghe, Ana-Maria, Iţcuş, Corina, Kanhaiya, Krishna, Pacioglu, Octavian, Popa, Laura Ioana, Trandafir, Romica, Tusa, Maria Iris, Sidoroff, Manuela, Păun, Mihaela, Czeizler, Eugen, Păun, Andrei, Petre, Ion
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8690228/
https://www.ncbi.nlm.nih.gov/pubmed/34864885
http://dx.doi.org/10.1093/bib/bbab490
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author Siminea, Nicoleta
Popescu, Victor
Sanchez Martin, Jose Angel
Florea, Daniela
Gavril, Georgiana
Gheorghe, Ana-Maria
Iţcuş, Corina
Kanhaiya, Krishna
Pacioglu, Octavian
Popa, Laura Ioana
Trandafir, Romica
Tusa, Maria Iris
Sidoroff, Manuela
Păun, Mihaela
Czeizler, Eugen
Păun, Andrei
Petre, Ion
author_facet Siminea, Nicoleta
Popescu, Victor
Sanchez Martin, Jose Angel
Florea, Daniela
Gavril, Georgiana
Gheorghe, Ana-Maria
Iţcuş, Corina
Kanhaiya, Krishna
Pacioglu, Octavian
Popa, Laura Ioana
Trandafir, Romica
Tusa, Maria Iris
Sidoroff, Manuela
Păun, Mihaela
Czeizler, Eugen
Păun, Andrei
Petre, Ion
author_sort Siminea, Nicoleta
collection PubMed
description To better understand the potential of drug repurposing in COVID-19, we analyzed control strategies over essential host factors for SARS-CoV-2 infection. We constructed comprehensive directed protein–protein interaction (PPI) networks integrating the top-ranked host factors, the drug target proteins and directed PPI data. We analyzed the networks to identify drug targets and combinations thereof that offer efficient control over the host factors. We validated our findings against clinical studies data and bioinformatics studies. Our method offers a new insight into the molecular details of the disease and into potentially new therapy targets for it. Our approach for drug repurposing is significant beyond COVID-19 and may be applied also to other diseases.
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spelling pubmed-86902282022-01-05 Network analytics for drug repurposing in COVID-19 Siminea, Nicoleta Popescu, Victor Sanchez Martin, Jose Angel Florea, Daniela Gavril, Georgiana Gheorghe, Ana-Maria Iţcuş, Corina Kanhaiya, Krishna Pacioglu, Octavian Popa, Laura Ioana Trandafir, Romica Tusa, Maria Iris Sidoroff, Manuela Păun, Mihaela Czeizler, Eugen Păun, Andrei Petre, Ion Brief Bioinform Problem Solving Protocol To better understand the potential of drug repurposing in COVID-19, we analyzed control strategies over essential host factors for SARS-CoV-2 infection. We constructed comprehensive directed protein–protein interaction (PPI) networks integrating the top-ranked host factors, the drug target proteins and directed PPI data. We analyzed the networks to identify drug targets and combinations thereof that offer efficient control over the host factors. We validated our findings against clinical studies data and bioinformatics studies. Our method offers a new insight into the molecular details of the disease and into potentially new therapy targets for it. Our approach for drug repurposing is significant beyond COVID-19 and may be applied also to other diseases. Oxford University Press 2021-12-07 /pmc/articles/PMC8690228/ /pubmed/34864885 http://dx.doi.org/10.1093/bib/bbab490 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Problem Solving Protocol
Siminea, Nicoleta
Popescu, Victor
Sanchez Martin, Jose Angel
Florea, Daniela
Gavril, Georgiana
Gheorghe, Ana-Maria
Iţcuş, Corina
Kanhaiya, Krishna
Pacioglu, Octavian
Popa, Laura Ioana
Trandafir, Romica
Tusa, Maria Iris
Sidoroff, Manuela
Păun, Mihaela
Czeizler, Eugen
Păun, Andrei
Petre, Ion
Network analytics for drug repurposing in COVID-19
title Network analytics for drug repurposing in COVID-19
title_full Network analytics for drug repurposing in COVID-19
title_fullStr Network analytics for drug repurposing in COVID-19
title_full_unstemmed Network analytics for drug repurposing in COVID-19
title_short Network analytics for drug repurposing in COVID-19
title_sort network analytics for drug repurposing in covid-19
topic Problem Solving Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8690228/
https://www.ncbi.nlm.nih.gov/pubmed/34864885
http://dx.doi.org/10.1093/bib/bbab490
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