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An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer

BACKGROUND: Patients with small-cell lung cancer (SCLC) are burdened by limited treatment options and the disease’s dismal prognosis. Long non-coding RNAs (lncRNAs) are essential regulators of genetic alteration and are actively involved in tumor immunity. However, few studies have examined interact...

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Autores principales: Zhang, Zhihui, Luo, Yuejun, Zhang, Chaoqi, Wu, Peng, Zhang, Guochao, Zeng, Qingpeg, Wang, Lide, Xue, Liyan, Yang, Zhaoyang, Zeng, Hua, Zheng, Bo, Tan, Fengwei, Xue, Qi, Gao, Shugeng, Sun, Nan, He, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8691030/
https://www.ncbi.nlm.nih.gov/pubmed/34930244
http://dx.doi.org/10.1186/s12935-021-02357-1
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author Zhang, Zhihui
Luo, Yuejun
Zhang, Chaoqi
Wu, Peng
Zhang, Guochao
Zeng, Qingpeg
Wang, Lide
Xue, Liyan
Yang, Zhaoyang
Zeng, Hua
Zheng, Bo
Tan, Fengwei
Xue, Qi
Gao, Shugeng
Sun, Nan
He, Jie
author_facet Zhang, Zhihui
Luo, Yuejun
Zhang, Chaoqi
Wu, Peng
Zhang, Guochao
Zeng, Qingpeg
Wang, Lide
Xue, Liyan
Yang, Zhaoyang
Zeng, Hua
Zheng, Bo
Tan, Fengwei
Xue, Qi
Gao, Shugeng
Sun, Nan
He, Jie
author_sort Zhang, Zhihui
collection PubMed
description BACKGROUND: Patients with small-cell lung cancer (SCLC) are burdened by limited treatment options and the disease’s dismal prognosis. Long non-coding RNAs (lncRNAs) are essential regulators of genetic alteration and are actively involved in tumor immunity. However, few studies have examined interactions between immune genes and lncRNAs in SCLC. METHODS: Immune-related lncRNA (irlncRNA) expression profiles and their clinical significance were explored. We enrolled 227 patients with SCLC, including 79 cases from GSE65002 and 148 cases from a validation cohort with corresponding qPCR data. The least absolute shrinkage and selection operator (LASSO) model was applied to identify prognostic irlncRNAs for an irlncRNA-based SCLC signature. We additionally investigated the potential mechanisms and immune landscape of the signature using bioinformatics methods. RESULTS: An irlncRNA signature including 8 irlncRNAs (ENOX1-AS1, AC005162, LINC00092, RPL34-AS1, AC104135, AC015971, AC126544, AP001189) was established for patients with SCLC in the training cohort. Low-risk patients were more likely to benefit from chemotherapy and achieve a favorable prognosis. The signature was also well-validated in the validation cohort and various clinical subgroups. Compared to other clinical parameters, the irlncRNA signature exhibited superior predictive performance for chemotherapy response and prognosis. The signature was as an independent prognostic factor in the training and validation cohorts. Interestingly, low-risk patients showed an activated immune phenotype. CONCLUSION: We constructed the first irlncRNA-based signature for chemotherapy efficacy and outcome prediction. The irlncRNA signature is a reliable and robust prognostic classifier that could be useful for clinical management and determination of potential chemotherapy benefit for patients with SCLC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-021-02357-1.
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spelling pubmed-86910302021-12-23 An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer Zhang, Zhihui Luo, Yuejun Zhang, Chaoqi Wu, Peng Zhang, Guochao Zeng, Qingpeg Wang, Lide Xue, Liyan Yang, Zhaoyang Zeng, Hua Zheng, Bo Tan, Fengwei Xue, Qi Gao, Shugeng Sun, Nan He, Jie Cancer Cell Int Primary Research BACKGROUND: Patients with small-cell lung cancer (SCLC) are burdened by limited treatment options and the disease’s dismal prognosis. Long non-coding RNAs (lncRNAs) are essential regulators of genetic alteration and are actively involved in tumor immunity. However, few studies have examined interactions between immune genes and lncRNAs in SCLC. METHODS: Immune-related lncRNA (irlncRNA) expression profiles and their clinical significance were explored. We enrolled 227 patients with SCLC, including 79 cases from GSE65002 and 148 cases from a validation cohort with corresponding qPCR data. The least absolute shrinkage and selection operator (LASSO) model was applied to identify prognostic irlncRNAs for an irlncRNA-based SCLC signature. We additionally investigated the potential mechanisms and immune landscape of the signature using bioinformatics methods. RESULTS: An irlncRNA signature including 8 irlncRNAs (ENOX1-AS1, AC005162, LINC00092, RPL34-AS1, AC104135, AC015971, AC126544, AP001189) was established for patients with SCLC in the training cohort. Low-risk patients were more likely to benefit from chemotherapy and achieve a favorable prognosis. The signature was also well-validated in the validation cohort and various clinical subgroups. Compared to other clinical parameters, the irlncRNA signature exhibited superior predictive performance for chemotherapy response and prognosis. The signature was as an independent prognostic factor in the training and validation cohorts. Interestingly, low-risk patients showed an activated immune phenotype. CONCLUSION: We constructed the first irlncRNA-based signature for chemotherapy efficacy and outcome prediction. The irlncRNA signature is a reliable and robust prognostic classifier that could be useful for clinical management and determination of potential chemotherapy benefit for patients with SCLC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-021-02357-1. BioMed Central 2021-12-20 /pmc/articles/PMC8691030/ /pubmed/34930244 http://dx.doi.org/10.1186/s12935-021-02357-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Primary Research
Zhang, Zhihui
Luo, Yuejun
Zhang, Chaoqi
Wu, Peng
Zhang, Guochao
Zeng, Qingpeg
Wang, Lide
Xue, Liyan
Yang, Zhaoyang
Zeng, Hua
Zheng, Bo
Tan, Fengwei
Xue, Qi
Gao, Shugeng
Sun, Nan
He, Jie
An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer
title An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer
title_full An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer
title_fullStr An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer
title_full_unstemmed An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer
title_short An immune-related lncRNA signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer
title_sort immune-related lncrna signature predicts prognosis and adjuvant chemotherapeutic response in patients with small-cell lung cancer
topic Primary Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8691030/
https://www.ncbi.nlm.nih.gov/pubmed/34930244
http://dx.doi.org/10.1186/s12935-021-02357-1
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