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Agent-based simulations for protecting nursing homes with prevention and vaccination strategies

Due to its high lethality among older people, the safety of nursing homes has been of central importance during the COVID-19 pandemic. With test procedures and vaccines becoming available at scale, nursing homes might relax prohibitory measures while controlling the spread of infections. By control...

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Autores principales: Lasser, Jana, Zuber, Johannes, Sorger, Johannes, Dervic, Elma, Ledebur, Katharina, Lindner, Simon David, Klager, Elisabeth, Kletečka-Pulker, Maria, Willschke, Harald, Stangl, Katrin, Stadtmann, Sarah, Haslinger, Christian, Klimek, Peter, Wochele-Thoma, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8692030/
https://www.ncbi.nlm.nih.gov/pubmed/34932931
http://dx.doi.org/10.1098/rsif.2021.0608
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author Lasser, Jana
Zuber, Johannes
Sorger, Johannes
Dervic, Elma
Ledebur, Katharina
Lindner, Simon David
Klager, Elisabeth
Kletečka-Pulker, Maria
Willschke, Harald
Stangl, Katrin
Stadtmann, Sarah
Haslinger, Christian
Klimek, Peter
Wochele-Thoma, Thomas
author_facet Lasser, Jana
Zuber, Johannes
Sorger, Johannes
Dervic, Elma
Ledebur, Katharina
Lindner, Simon David
Klager, Elisabeth
Kletečka-Pulker, Maria
Willschke, Harald
Stangl, Katrin
Stadtmann, Sarah
Haslinger, Christian
Klimek, Peter
Wochele-Thoma, Thomas
author_sort Lasser, Jana
collection PubMed
description Due to its high lethality among older people, the safety of nursing homes has been of central importance during the COVID-19 pandemic. With test procedures and vaccines becoming available at scale, nursing homes might relax prohibitory measures while controlling the spread of infections. By control we mean that each index case infects less than one other person on average. Here, we develop an agent-based epidemiological model for the spread of SARS-CoV-2 calibrated to Austrian nursing homes to identify optimal prevention strategies. We find that the effectiveness of mitigation testing depends critically on test turnover time (time until test result), the detection threshold of tests and mitigation testing frequencies. Under realistic conditions and in absence of vaccinations, we find that mitigation testing of employees only might be sufficient to control outbreaks if tests have low turnover times and detection thresholds. If vaccines that are 60% effective against high viral load and transmission are available, control is achieved if 80% or more of the residents are vaccinated, even without mitigation testing and if residents are allowed to have visitors. Since these results strongly depend on vaccine efficacy against infection, retention of testing infrastructures, regular testing and sequencing of virus genomes is advised to enable early identification of new variants of concern.
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spelling pubmed-86920302021-12-22 Agent-based simulations for protecting nursing homes with prevention and vaccination strategies Lasser, Jana Zuber, Johannes Sorger, Johannes Dervic, Elma Ledebur, Katharina Lindner, Simon David Klager, Elisabeth Kletečka-Pulker, Maria Willschke, Harald Stangl, Katrin Stadtmann, Sarah Haslinger, Christian Klimek, Peter Wochele-Thoma, Thomas J R Soc Interface Life Sciences–Mathematics interface Due to its high lethality among older people, the safety of nursing homes has been of central importance during the COVID-19 pandemic. With test procedures and vaccines becoming available at scale, nursing homes might relax prohibitory measures while controlling the spread of infections. By control we mean that each index case infects less than one other person on average. Here, we develop an agent-based epidemiological model for the spread of SARS-CoV-2 calibrated to Austrian nursing homes to identify optimal prevention strategies. We find that the effectiveness of mitigation testing depends critically on test turnover time (time until test result), the detection threshold of tests and mitigation testing frequencies. Under realistic conditions and in absence of vaccinations, we find that mitigation testing of employees only might be sufficient to control outbreaks if tests have low turnover times and detection thresholds. If vaccines that are 60% effective against high viral load and transmission are available, control is achieved if 80% or more of the residents are vaccinated, even without mitigation testing and if residents are allowed to have visitors. Since these results strongly depend on vaccine efficacy against infection, retention of testing infrastructures, regular testing and sequencing of virus genomes is advised to enable early identification of new variants of concern. The Royal Society 2021-12-22 /pmc/articles/PMC8692030/ /pubmed/34932931 http://dx.doi.org/10.1098/rsif.2021.0608 Text en © 2021 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Lasser, Jana
Zuber, Johannes
Sorger, Johannes
Dervic, Elma
Ledebur, Katharina
Lindner, Simon David
Klager, Elisabeth
Kletečka-Pulker, Maria
Willschke, Harald
Stangl, Katrin
Stadtmann, Sarah
Haslinger, Christian
Klimek, Peter
Wochele-Thoma, Thomas
Agent-based simulations for protecting nursing homes with prevention and vaccination strategies
title Agent-based simulations for protecting nursing homes with prevention and vaccination strategies
title_full Agent-based simulations for protecting nursing homes with prevention and vaccination strategies
title_fullStr Agent-based simulations for protecting nursing homes with prevention and vaccination strategies
title_full_unstemmed Agent-based simulations for protecting nursing homes with prevention and vaccination strategies
title_short Agent-based simulations for protecting nursing homes with prevention and vaccination strategies
title_sort agent-based simulations for protecting nursing homes with prevention and vaccination strategies
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8692030/
https://www.ncbi.nlm.nih.gov/pubmed/34932931
http://dx.doi.org/10.1098/rsif.2021.0608
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