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Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A

[Image: see text] The structure, stability, and enzymatic activity of the adduct formed upon the reaction of the V–picolinato (pic) complex [V(IV)O(pic)(2)(H(2)O)], with an octahedral geometry and the water ligand in cis to the V=O group, with the bovine pancreatic ribonuclease (RNase A) were studie...

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Autores principales: Ferraro, Giarita, Demitri, Nicola, Vitale, Luigi, Sciortino, Giuseppe, Sanna, Daniele, Ugone, Valeria, Garribba, Eugenio, Merlino, Antonello
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8693189/
https://www.ncbi.nlm.nih.gov/pubmed/34847328
http://dx.doi.org/10.1021/acs.inorgchem.1c02912
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author Ferraro, Giarita
Demitri, Nicola
Vitale, Luigi
Sciortino, Giuseppe
Sanna, Daniele
Ugone, Valeria
Garribba, Eugenio
Merlino, Antonello
author_facet Ferraro, Giarita
Demitri, Nicola
Vitale, Luigi
Sciortino, Giuseppe
Sanna, Daniele
Ugone, Valeria
Garribba, Eugenio
Merlino, Antonello
author_sort Ferraro, Giarita
collection PubMed
description [Image: see text] The structure, stability, and enzymatic activity of the adduct formed upon the reaction of the V–picolinato (pic) complex [V(IV)O(pic)(2)(H(2)O)], with an octahedral geometry and the water ligand in cis to the V=O group, with the bovine pancreatic ribonuclease (RNase A) were studied. While electrospray ionization-mass spectrometry, circular dichroism, and ultraviolet–visible absorption spectroscopy substantiate the interaction between the metal moiety and RNase A, electron paramagnetic resonance (EPR) allows us to determine that a carboxylate group, stemming from Asp or Glu residues, and imidazole nitrogen from His residues are involved in the V binding at acidic and physiological pH, respectively. Crystallographic data demonstrate that the V(IV)O(pic)(2) moiety coordinates the side chain of Glu111 of RNase A, by substituting the equatorial water molecule at acidic pH. Computational methods confirm that Glu111 is the most affine residue and interacts favorably with the OC-6-23-Δ enantiomer establishing an extended network of hydrogen bonds and van der Waals stabilizations. By increasing the pH around neutrality, with the deprotonation of histidine side chains, the binding of the V complex to His105 and His119 could occur, with that to His105 which should be preferred when compared to that to the catalytically important His119. The binding of the V compound affects the enzymatic activity of RNase A, but it does not alter its overall structure and stability.
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spelling pubmed-86931892021-12-22 Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A Ferraro, Giarita Demitri, Nicola Vitale, Luigi Sciortino, Giuseppe Sanna, Daniele Ugone, Valeria Garribba, Eugenio Merlino, Antonello Inorg Chem [Image: see text] The structure, stability, and enzymatic activity of the adduct formed upon the reaction of the V–picolinato (pic) complex [V(IV)O(pic)(2)(H(2)O)], with an octahedral geometry and the water ligand in cis to the V=O group, with the bovine pancreatic ribonuclease (RNase A) were studied. While electrospray ionization-mass spectrometry, circular dichroism, and ultraviolet–visible absorption spectroscopy substantiate the interaction between the metal moiety and RNase A, electron paramagnetic resonance (EPR) allows us to determine that a carboxylate group, stemming from Asp or Glu residues, and imidazole nitrogen from His residues are involved in the V binding at acidic and physiological pH, respectively. Crystallographic data demonstrate that the V(IV)O(pic)(2) moiety coordinates the side chain of Glu111 of RNase A, by substituting the equatorial water molecule at acidic pH. Computational methods confirm that Glu111 is the most affine residue and interacts favorably with the OC-6-23-Δ enantiomer establishing an extended network of hydrogen bonds and van der Waals stabilizations. By increasing the pH around neutrality, with the deprotonation of histidine side chains, the binding of the V complex to His105 and His119 could occur, with that to His105 which should be preferred when compared to that to the catalytically important His119. The binding of the V compound affects the enzymatic activity of RNase A, but it does not alter its overall structure and stability. American Chemical Society 2021-11-30 2021-12-20 /pmc/articles/PMC8693189/ /pubmed/34847328 http://dx.doi.org/10.1021/acs.inorgchem.1c02912 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Ferraro, Giarita
Demitri, Nicola
Vitale, Luigi
Sciortino, Giuseppe
Sanna, Daniele
Ugone, Valeria
Garribba, Eugenio
Merlino, Antonello
Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A
title Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A
title_full Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A
title_fullStr Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A
title_full_unstemmed Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A
title_short Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V(IV)O–Picolinato Complex with RNase A
title_sort spectroscopic/computational characterization and the x-ray structure of the adduct of the v(iv)o–picolinato complex with rnase a
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8693189/
https://www.ncbi.nlm.nih.gov/pubmed/34847328
http://dx.doi.org/10.1021/acs.inorgchem.1c02912
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