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Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma

BACKGROUND: An effective diagnostic and prognostic marker based on the gene expression profile of classic Hodgkin lymphoma (cHL) has not yet been developed. The aim of the present study was to investigate potential markers for the diagnosis and prediction of cHL prognosis. METHODS: The gene expressi...

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Autores principales: Kuang, Zhixing, Tu, Jiannan, Li, Xun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8694578/
https://www.ncbi.nlm.nih.gov/pubmed/34955650
http://dx.doi.org/10.2147/IJGM.S341557
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author Kuang, Zhixing
Tu, Jiannan
Li, Xun
author_facet Kuang, Zhixing
Tu, Jiannan
Li, Xun
author_sort Kuang, Zhixing
collection PubMed
description BACKGROUND: An effective diagnostic and prognostic marker based on the gene expression profile of classic Hodgkin lymphoma (cHL) has not yet been developed. The aim of the present study was to investigate potential markers for the diagnosis and prediction of cHL prognosis. METHODS: The gene expression profiles with all available clinical features were downloaded from the Gene Expression Omnibus (GEO) database. Then, multiple machine learning algorithms were applied to develop and validate a diagnostic signature by comparing cHL with normal control. In addition, we identified prognostic genes and built a prognostic model with them to predict the prognosis for 130 patients with cHL which were treated with first-line treatment (ABVD chemotherapy or an ABVD-like regimen). RESULTS: A diagnostic prediction signature was constructed and showed high specificity and sensitivity (training cohort: AUC=0.981,95% CI 0.933–0.998, P<0.001, validation cohort: AUC=0.955,95% CI 0.895–0.986, P<0.001). Additionally, nine prognostic genes (LAMP1, STAT1, MMP9, C1QB, ICAM1, CD274, CCL19, HCK and LILRB2) were screened and a prognostic prediction model was constructed with them, which had been confirmed effectively predicting prognosis (P<0.001). Furthermore, the results of the immune infiltration assessment indicated that the high scale of the fraction of CD8 + T cells, M1 macrophages, resting mast cells associated with an adverse outcome in cHL, and naive B cells related to prolonged survival. In addition, a nomogram that combined the prognostic prediction model and clinical characteristics is also suggested to have a good predictive value for the prognosis of patients. CONCLUSION: The new markers found in this study may be helpful for the diagnosis and prediction of the prognosis of cHL.
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spelling pubmed-86945782021-12-23 Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma Kuang, Zhixing Tu, Jiannan Li, Xun Int J Gen Med Original Research BACKGROUND: An effective diagnostic and prognostic marker based on the gene expression profile of classic Hodgkin lymphoma (cHL) has not yet been developed. The aim of the present study was to investigate potential markers for the diagnosis and prediction of cHL prognosis. METHODS: The gene expression profiles with all available clinical features were downloaded from the Gene Expression Omnibus (GEO) database. Then, multiple machine learning algorithms were applied to develop and validate a diagnostic signature by comparing cHL with normal control. In addition, we identified prognostic genes and built a prognostic model with them to predict the prognosis for 130 patients with cHL which were treated with first-line treatment (ABVD chemotherapy or an ABVD-like regimen). RESULTS: A diagnostic prediction signature was constructed and showed high specificity and sensitivity (training cohort: AUC=0.981,95% CI 0.933–0.998, P<0.001, validation cohort: AUC=0.955,95% CI 0.895–0.986, P<0.001). Additionally, nine prognostic genes (LAMP1, STAT1, MMP9, C1QB, ICAM1, CD274, CCL19, HCK and LILRB2) were screened and a prognostic prediction model was constructed with them, which had been confirmed effectively predicting prognosis (P<0.001). Furthermore, the results of the immune infiltration assessment indicated that the high scale of the fraction of CD8 + T cells, M1 macrophages, resting mast cells associated with an adverse outcome in cHL, and naive B cells related to prolonged survival. In addition, a nomogram that combined the prognostic prediction model and clinical characteristics is also suggested to have a good predictive value for the prognosis of patients. CONCLUSION: The new markers found in this study may be helpful for the diagnosis and prediction of the prognosis of cHL. Dove 2021-12-18 /pmc/articles/PMC8694578/ /pubmed/34955650 http://dx.doi.org/10.2147/IJGM.S341557 Text en © 2021 Kuang et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Kuang, Zhixing
Tu, Jiannan
Li, Xun
Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma
title Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma
title_full Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma
title_fullStr Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma
title_full_unstemmed Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma
title_short Combined Identification of Novel Markers for Diagnosis and Prognostic of Classic Hodgkin Lymphoma
title_sort combined identification of novel markers for diagnosis and prognostic of classic hodgkin lymphoma
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8694578/
https://www.ncbi.nlm.nih.gov/pubmed/34955650
http://dx.doi.org/10.2147/IJGM.S341557
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