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Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients

Multiple myeloma (MM) is the second most commonly diagnosed hematological malignancy. Understanding the basic mechanisms of the metabolism in MM may lead to new therapies that benefit patients. We collected the gene expression profile data of GSE39754 and performed differential analysis. Furthermore...

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Autores principales: Wang, Rui, Bu, Wenxuan, Yang, Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8694996/
https://www.ncbi.nlm.nih.gov/pubmed/34956573
http://dx.doi.org/10.1155/2021/6574491
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author Wang, Rui
Bu, Wenxuan
Yang, Yang
author_facet Wang, Rui
Bu, Wenxuan
Yang, Yang
author_sort Wang, Rui
collection PubMed
description Multiple myeloma (MM) is the second most commonly diagnosed hematological malignancy. Understanding the basic mechanisms of the metabolism in MM may lead to new therapies that benefit patients. We collected the gene expression profile data of GSE39754 and performed differential analysis. Furthermore, identify the candidate genes that affect the prognosis of the differentially expressed genes (DEGs) related to the metabolism. Enrichment analysis is used to identify the biological effects of candidate genes. Perform coexpression analysis on the verified DEGs. In addition, the candidate genes are used to cluster MM into different subtypes through consistent clustering. Use LASSO regression analysis to identify key genes, and use Cox regression analysis to evaluate the prognostic effects of key genes. Evaluation of immune cell infiltration in MM is by CIBERSORT. We identified 2821 DEGs, of which 348 genes were metabolic-related prognostic genes and were considered candidate genes. Enrichment analysis revealed that the candidate genes are mainly related to the proteasome, purine metabolism, and cysteine and methionine metabolism signaling pathways. According to the consensus clustering method, we identified the two subtypes of group 1 and group 2 that affect the prognosis of MM patients. Using the LASSO model, we have identified 10 key genes. The prognosis of the high-risk group identified by Cox regression analysis is worse than that of the low-risk group. Among them, PKLR has a greater impact on the prognosis of MM, and the prognosis of MM patients is poor when the expression is high. In addition, the level of immune cell infiltration in the high-risk group is higher than that in the low-risk group. In the summary, metabolism-related genes significantly affect the prognosis of MM patients through the metabolic process of MM patients. PKLR may be a prognostic risk factor for MM patients.
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spelling pubmed-86949962021-12-23 Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients Wang, Rui Bu, Wenxuan Yang, Yang J Healthc Eng Research Article Multiple myeloma (MM) is the second most commonly diagnosed hematological malignancy. Understanding the basic mechanisms of the metabolism in MM may lead to new therapies that benefit patients. We collected the gene expression profile data of GSE39754 and performed differential analysis. Furthermore, identify the candidate genes that affect the prognosis of the differentially expressed genes (DEGs) related to the metabolism. Enrichment analysis is used to identify the biological effects of candidate genes. Perform coexpression analysis on the verified DEGs. In addition, the candidate genes are used to cluster MM into different subtypes through consistent clustering. Use LASSO regression analysis to identify key genes, and use Cox regression analysis to evaluate the prognostic effects of key genes. Evaluation of immune cell infiltration in MM is by CIBERSORT. We identified 2821 DEGs, of which 348 genes were metabolic-related prognostic genes and were considered candidate genes. Enrichment analysis revealed that the candidate genes are mainly related to the proteasome, purine metabolism, and cysteine and methionine metabolism signaling pathways. According to the consensus clustering method, we identified the two subtypes of group 1 and group 2 that affect the prognosis of MM patients. Using the LASSO model, we have identified 10 key genes. The prognosis of the high-risk group identified by Cox regression analysis is worse than that of the low-risk group. Among them, PKLR has a greater impact on the prognosis of MM, and the prognosis of MM patients is poor when the expression is high. In addition, the level of immune cell infiltration in the high-risk group is higher than that in the low-risk group. In the summary, metabolism-related genes significantly affect the prognosis of MM patients through the metabolic process of MM patients. PKLR may be a prognostic risk factor for MM patients. Hindawi 2021-12-15 /pmc/articles/PMC8694996/ /pubmed/34956573 http://dx.doi.org/10.1155/2021/6574491 Text en Copyright © 2021 Rui Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Rui
Bu, Wenxuan
Yang, Yang
Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients
title Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients
title_full Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients
title_fullStr Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients
title_full_unstemmed Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients
title_short Identification of Metabolism-Related Genes Influencing Prognosis of Multiple Myeloma Patients
title_sort identification of metabolism-related genes influencing prognosis of multiple myeloma patients
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8694996/
https://www.ncbi.nlm.nih.gov/pubmed/34956573
http://dx.doi.org/10.1155/2021/6574491
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