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Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives

The crystalline forms of tris(pyridin-2-yl)phosphoric triamide, OP[NH-(2)Py](3) were investigated using single crystal X-ray diffraction, both as a metal complex [Co{(O)P[NH-(2)Py](2)[NH-(2)PyH]}(2)]Cl(3), compound 1, and as the purely organic pseudopolymorphs, the pure/anhydrate OP[NH-(2)Py](3), 2,...

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Autores principales: Sebghati, Marjan, Tarahhomi, Atekeh, Bozorgvar, Marjan Sadat, Dumitrescu, Dan G., van der Lee, Arie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8695197/
https://www.ncbi.nlm.nih.gov/pubmed/35423343
http://dx.doi.org/10.1039/d0ra10539b
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author Sebghati, Marjan
Tarahhomi, Atekeh
Bozorgvar, Marjan Sadat
Dumitrescu, Dan G.
van der Lee, Arie
author_facet Sebghati, Marjan
Tarahhomi, Atekeh
Bozorgvar, Marjan Sadat
Dumitrescu, Dan G.
van der Lee, Arie
author_sort Sebghati, Marjan
collection PubMed
description The crystalline forms of tris(pyridin-2-yl)phosphoric triamide, OP[NH-(2)Py](3) were investigated using single crystal X-ray diffraction, both as a metal complex [Co{(O)P[NH-(2)Py](2)[NH-(2)PyH]}(2)]Cl(3), compound 1, and as the purely organic pseudopolymorphs, the pure/anhydrate OP[NH-(2)Py](3), 2, monohydrate 2OP[NH-(2)Py](3)·H(2)O, 3 and solvate 2OP[NH-(2)Py](3)·2DMF·H(2)O, 4, respectively. An improved model of the metal organic framework (MOF) structure of Cu(ii)O(6) {[Cu(OCHO)(3)][(CH(3))(2)NH(2)]}(n), 5 is also reported. Compound 1 is the first example of a discrete chelate phosphoric triamide (PT) complex with an [N](3)P(O)-based backbone which in the PT compound acts as a flexible tridentate ligand. The structures 1, 3 and 4 crystallize in the monoclinic space group P2(1)/n, while the anhydrous form 2 crystallizes in the R3̄ trigonal space group. 5 which was obtained as a byproduct of the synthesis process of coordination compounds of OP[NH-(2)Py](3), crystallizes in the monoclinic space group I2/c. Hydrogen bonding pattern analysis for the different solid state forms of OP[NH-(2)Py](3) (2–4) shows a 2D sheet of the N–H⋯N linked molecules for 2, and a 1D chain and a ten-membered ring motif, both formed via the hydrogen bonds N–H⋯O, N–H⋯N and O–H⋯O, for 3 and 4, respectively. Of note is the unusual absence of the expected hydrogen bond interaction N–H⋯O[double bond, length as m-dash]P of PT compounds and also a lack of any significant π interactions in structure 2. The role of the solvent/hydrate and substituent (aminopyridine) in the formation of the expected hydrogen bond interactions in the studied solid state forms is also investigated. For these structures, crystal packing analysis using 3D Hirshfeld surface (HS), 2D fingerprint plot (FP) and enrichment ratio (E) calculations confirm a competition between the pyridinyl nitrogen and phosphoryl oxygen atoms as H-bond acceptors to construct the N–H⋯N or N–H⋯O contacts. Moreover, the significant differences between the anhydrous form of OP[NH-(2)Py](3), 2, and the monohydrate and solvate forms, 3 and 4, can be correlated to the pseudo-infinite (in 2) versus finite values (in 3 and 4) for the upper values of d(e) and d(i) on the related full FPs.
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spelling pubmed-86951972022-04-13 Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives Sebghati, Marjan Tarahhomi, Atekeh Bozorgvar, Marjan Sadat Dumitrescu, Dan G. van der Lee, Arie RSC Adv Chemistry The crystalline forms of tris(pyridin-2-yl)phosphoric triamide, OP[NH-(2)Py](3) were investigated using single crystal X-ray diffraction, both as a metal complex [Co{(O)P[NH-(2)Py](2)[NH-(2)PyH]}(2)]Cl(3), compound 1, and as the purely organic pseudopolymorphs, the pure/anhydrate OP[NH-(2)Py](3), 2, monohydrate 2OP[NH-(2)Py](3)·H(2)O, 3 and solvate 2OP[NH-(2)Py](3)·2DMF·H(2)O, 4, respectively. An improved model of the metal organic framework (MOF) structure of Cu(ii)O(6) {[Cu(OCHO)(3)][(CH(3))(2)NH(2)]}(n), 5 is also reported. Compound 1 is the first example of a discrete chelate phosphoric triamide (PT) complex with an [N](3)P(O)-based backbone which in the PT compound acts as a flexible tridentate ligand. The structures 1, 3 and 4 crystallize in the monoclinic space group P2(1)/n, while the anhydrous form 2 crystallizes in the R3̄ trigonal space group. 5 which was obtained as a byproduct of the synthesis process of coordination compounds of OP[NH-(2)Py](3), crystallizes in the monoclinic space group I2/c. Hydrogen bonding pattern analysis for the different solid state forms of OP[NH-(2)Py](3) (2–4) shows a 2D sheet of the N–H⋯N linked molecules for 2, and a 1D chain and a ten-membered ring motif, both formed via the hydrogen bonds N–H⋯O, N–H⋯N and O–H⋯O, for 3 and 4, respectively. Of note is the unusual absence of the expected hydrogen bond interaction N–H⋯O[double bond, length as m-dash]P of PT compounds and also a lack of any significant π interactions in structure 2. The role of the solvent/hydrate and substituent (aminopyridine) in the formation of the expected hydrogen bond interactions in the studied solid state forms is also investigated. For these structures, crystal packing analysis using 3D Hirshfeld surface (HS), 2D fingerprint plot (FP) and enrichment ratio (E) calculations confirm a competition between the pyridinyl nitrogen and phosphoryl oxygen atoms as H-bond acceptors to construct the N–H⋯N or N–H⋯O contacts. Moreover, the significant differences between the anhydrous form of OP[NH-(2)Py](3), 2, and the monohydrate and solvate forms, 3 and 4, can be correlated to the pseudo-infinite (in 2) versus finite values (in 3 and 4) for the upper values of d(e) and d(i) on the related full FPs. The Royal Society of Chemistry 2021-02-22 /pmc/articles/PMC8695197/ /pubmed/35423343 http://dx.doi.org/10.1039/d0ra10539b Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Sebghati, Marjan
Tarahhomi, Atekeh
Bozorgvar, Marjan Sadat
Dumitrescu, Dan G.
van der Lee, Arie
Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives
title Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives
title_full Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives
title_fullStr Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives
title_full_unstemmed Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives
title_short Coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives
title_sort coordination versus hydrogen bonds in the structures of different tris(pyridin-2-yl)phosphoric triamide derivatives
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8695197/
https://www.ncbi.nlm.nih.gov/pubmed/35423343
http://dx.doi.org/10.1039/d0ra10539b
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