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MomentClosure.jl: automated moment closure approximations in Julia
SUMMARY: MomentClosure.jl is a Julia package providing automated derivation of the time-evolution equations of the moments of molecule numbers for virtually any chemical reaction network using a wide range of moment closure approximations. It extends the capabilities of modelling stochastic biochemi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8696096/ https://www.ncbi.nlm.nih.gov/pubmed/34170295 http://dx.doi.org/10.1093/bioinformatics/btab469 |
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author | Sukys, Augustinas Grima, Ramon |
author_facet | Sukys, Augustinas Grima, Ramon |
author_sort | Sukys, Augustinas |
collection | PubMed |
description | SUMMARY: MomentClosure.jl is a Julia package providing automated derivation of the time-evolution equations of the moments of molecule numbers for virtually any chemical reaction network using a wide range of moment closure approximations. It extends the capabilities of modelling stochastic biochemical systems in Julia and can be particularly useful when exact analytic solutions of the chemical master equation are unavailable and when Monte Carlo simulations are computationally expensive. AVAILABILITY AND IMPLEMENTATION: MomentClosure.jl is freely accessible under the MIT licence. Source code and documentation are available at https://github.com/augustinas1/MomentClosure.jl. |
format | Online Article Text |
id | pubmed-8696096 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-86960962022-01-04 MomentClosure.jl: automated moment closure approximations in Julia Sukys, Augustinas Grima, Ramon Bioinformatics Applications Notes SUMMARY: MomentClosure.jl is a Julia package providing automated derivation of the time-evolution equations of the moments of molecule numbers for virtually any chemical reaction network using a wide range of moment closure approximations. It extends the capabilities of modelling stochastic biochemical systems in Julia and can be particularly useful when exact analytic solutions of the chemical master equation are unavailable and when Monte Carlo simulations are computationally expensive. AVAILABILITY AND IMPLEMENTATION: MomentClosure.jl is freely accessible under the MIT licence. Source code and documentation are available at https://github.com/augustinas1/MomentClosure.jl. Oxford University Press 2021-06-25 /pmc/articles/PMC8696096/ /pubmed/34170295 http://dx.doi.org/10.1093/bioinformatics/btab469 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Applications Notes Sukys, Augustinas Grima, Ramon MomentClosure.jl: automated moment closure approximations in Julia |
title | MomentClosure.jl: automated moment closure approximations in Julia |
title_full | MomentClosure.jl: automated moment closure approximations in Julia |
title_fullStr | MomentClosure.jl: automated moment closure approximations in Julia |
title_full_unstemmed | MomentClosure.jl: automated moment closure approximations in Julia |
title_short | MomentClosure.jl: automated moment closure approximations in Julia |
title_sort | momentclosure.jl: automated moment closure approximations in julia |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8696096/ https://www.ncbi.nlm.nih.gov/pubmed/34170295 http://dx.doi.org/10.1093/bioinformatics/btab469 |
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