Cargando…

Mapping the Melanoma Plasma Proteome (MPP) Using Single-Shot Proteomics Interfaced with the WiMT Database

SIMPLE SUMMARY: We developed a clinical proteomics methodology, known as Wise MS Transfer (WiMT), for deep identification of blood proteins in undepleted plasma samples. We applied it to the analysis of undepleted melanoma plasma samples as a proof of principle. Malignant melanoma is the most aggres...

Descripción completa

Detalles Bibliográficos
Autores principales:	Almeida, Natália, Rodriguez, Jimmy, Pla Parada, Indira, Perez-Riverol, Yasset, Woldmar, Nicole, Kim, Yonghyo, Oskolas, Henriett, Betancourt, Lazaro, Valdés, Jeovanis Gil, Sahlin, K. Barbara, Pizzatti, Luciana, Szasz, A. Marcell, Kárpáti, Sarolta, Appelqvist, Roger, Malm, Johan, B. Domont, Gilberto, C. S. Nogueira, Fábio, Marko-Varga, György, Sanchez, Aniel
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8699267/ https://www.ncbi.nlm.nih.gov/pubmed/34944842 http://dx.doi.org/10.3390/cancers13246224

Ejemplares similares

Protein Expression in Metastatic Melanoma and the Link to Disease Presentation in a Range of Tumor Phenotypes
por: Kim, Yonghyo, et al.
Publicado: (2020)

A biobanking turning‐point in the use of formalin‐fixed, paraffin tumor blocks to unveil kinase signaling in melanoma
por: Velasquez, Erika, et al.
Publicado: (2021)

The Human Melanoma Proteome Atlas—Complementing the melanoma transcriptome
por: Betancourt, Lazaro Hiram, et al.
Publicado: (2021)

The human melanoma proteome atlas—Defining the molecular pathology
por: Betancourt, Lazaro Hiram, et al.
Publicado: (2021)

Deep Proteomic Analysis on Biobanked Paraffine-Archived Melanoma with Prognostic/Predictive Biomarker Read-Out
por: Szadai, Leticia, et al.
Publicado: (2021)

Novel functional proteins coded by the human genome discovered in metastases of melanoma patients
por: Sanchez, Aniel, et al.
Publicado: (2019)

Proteomic Alterations in Follicular Fluid of Human Small Antral Follicles Collected from Polycystic Ovaries—A Pilot Study
por: Pla, Indira, et al.
Publicado: (2022)

Proteomic analysis enables distinction of early‐ versus advanced‐stage lung adenocarcinomas
por: Kelemen, Olga, et al.
Publicado: (2020)

Future Prospects of Spectral Clustering Approaches in Proteomics
por: Perez‐Riverol, Yasset, et al.
Publicado: (2018)

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics
por: Perez-Riverol, Yasset, et al.
Publicado: (2015)

Proteome of fluid from human ovarian small antral follicles reveals insights in folliculogenesis and oocyte maturation
por: Pla, Indira, et al.
Publicado: (2020)

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
por: Perez-Riverol, Yasset, et al.
Publicado: (2015)

Novel protein markers of androgen activity in humans: proteomic study of plasma from young chemically castrated men
por: Giwercman, Aleksander, et al.
Publicado: (2022)

Clinical protein science in translational medicine targeting malignant melanoma
por: Gil, Jeovanis, et al.
Publicado: (2019)

Proteomic analysis of brain metastatic lung adenocarcinoma reveals intertumoral heterogeneity and specific alterations associated with the timing of brain metastases
por: Woldmar, N., et al.
Publicado: (2022)

Mitochondrial and immune response dysregulation in melanoma recurrence
por: Szadai, Leticia, et al.
Publicado: (2023)

In‐depth proteomic analysis reveals unique subtype‐specific signatures in human small‐cell lung cancer
por: Szeitz, Beáta, et al.
Publicado: (2022)

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
por: Perez-Riverol, Yasset, et al.
Publicado: (2016)

A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics
por: Luo, Xiyang, et al.
Publicado: (2022)

An Observational Study on the Molecular Profiling of Primary Melanomas Reveals a Progression Dependence on Mitochondrial Activation
por: Gil, Jeovanis, et al.
Publicado: (2021)

Short-Term Effect of Induced Alterations in Testosterone Levels on Fasting Plasma Amino Acid Levels in Healthy Young Men
por: Sahlin, K. Barbara, et al.
Publicado: (2021)

Plasma metabolome study reveals metabolic changes induced by pharmacological castration and testosterone supplementation in healthy young men
por: de Siqueira Guedes, Jéssica, et al.
Publicado: (2022)

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective()
por: Perez-Riverol, Yasset, et al.
Publicado: (2014)

Proteomic analysis of S-nitrosylation induced by 1-methyl-4-phenylpyridinium (MPP(+))
por: Komatsubara, Akira T, et al.
Publicado: (2012)

ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics
por: Rehfeldt, Tobias G., et al.
Publicado: (2023)

lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation
por: Claeys, Tine, et al.
Publicado: (2023)

Biobank integration of large-scale clinical and histopathology melanoma studies within the European Cancer Moonshot Lund Center
por: Malm, Johan, et al.
Publicado: (2018)

Organ Specific Copy Number Variations in Visceral Metastases of Human Melanoma
por: Papp, Orsolya, et al.
Publicado: (2021)

Topological Dissection of Proteomic Changes Linked to the Limbic Stage of Alzheimer’s Disease
por: Velásquez, Erika, et al.
Publicado: (2021)

BioContainers Registry: searching bioinformatics and proteomics tools, packages, and containers
por: Bai, Jingwen, et al.
Publicado: (2021)

Quantitative proteomic analysis identifies proteins and pathways related to neuronal development in differentiated SH-SY5Y neuroblastoma cells
por: Murillo, Jimmy Rodriguez, et al.
Publicado: (2017)

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
por: Deutsch, Eric W., et al.
Publicado: (2017)

The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics
por: Deutsch, Eric W, et al.
Publicado: (2020)

Proteomic Study to Survey the CIGB-552 Antitumor Effect
por: Rodríguez-Ulloa, Arielis, et al.
Publicado: (2015)

A proteomic study of sepsis
por: Soares, A, et al.
Publicado: (2005)

Systems biology analysis of the proteomic alterations induced by MPP(+), a Parkinson's disease-related mitochondrial toxin
por: Monti, Chiara, et al.
Publicado: (2015)

Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data
por: Betancourt, Lazaro Hiram, et al.
Publicado: (2019)

PRIDE Inspector: a tool to visualize and validate MS proteomics data
por: Wang, Rui, et al.
Publicado: (2012)

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
por: Griss, Johannes, et al.
Publicado: (2016)

The Alteration of Nasopharyngeal and Oropharyngeal Microbiota in Children with MPP and Non-MPP
por: Lu, Zhiwei, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_uattqkibtcj7pe9hob2crlmj72